View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18651_high_5 (Length: 549)

Name: NF18651_high_5
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18651_high_5
NF18651_high_5
[»] chr7 (10 HSPs)
chr7 (10-467)||(43654608-43655065)
chr7 (67-143)||(27251857-27251933)
chr7 (66-142)||(28346990-28347066)
chr7 (66-143)||(26404253-26404330)
chr7 (66-143)||(40755255-40755332)
chr7 (140-209)||(19480506-19480575)
chr7 (31-64)||(26404314-26404347)
chr7 (31-64)||(27251917-27251950)
chr7 (250-334)||(39474469-39474553)
chr7 (31-64)||(28347051-28347084)
[»] chr3 (16 HSPs)
chr3 (249-438)||(25725855-25726046)
chr3 (255-444)||(17272135-17272320)
chr3 (66-143)||(21179604-21179681)
chr3 (66-143)||(49003877-49003954)
chr3 (66-143)||(51799079-51799156)
chr3 (66-143)||(39506509-39506586)
chr3 (69-142)||(47096501-47096574)
chr3 (69-142)||(53136895-53136968)
chr3 (73-143)||(30892043-30892113)
chr3 (31-64)||(21179665-21179698)
chr3 (31-64)||(39506492-39506525)
chr3 (31-64)||(49003938-49003971)
chr3 (31-64)||(51799062-51799095)
chr3 (299-357)||(4963949-4964007)
chr3 (247-357)||(14306857-14306967)
chr3 (241-354)||(30793598-30793711)
[»] chr4 (11 HSPs)
chr4 (218-438)||(48498469-48498690)
chr4 (66-143)||(43632600-43632677)
chr4 (66-143)||(42606098-42606175)
chr4 (66-143)||(44804152-44804229)
chr4 (66-143)||(21063661-21063738)
chr4 (66-143)||(35306655-35306731)
chr4 (31-64)||(44804135-44804168)
chr4 (252-334)||(25124311-25124393)
chr4 (31-64)||(35306638-35306671)
chr4 (31-64)||(42606159-42606192)
chr4 (31-64)||(43632583-43632616)
[»] chr6 (4 HSPs)
chr6 (66-143)||(7685019-7685096)
chr6 (66-143)||(31157187-31157264)
chr6 (140-209)||(13216012-13216081)
chr6 (31-64)||(31157170-31157203)
[»] chr2 (8 HSPs)
chr2 (66-143)||(4199575-4199652)
chr2 (66-143)||(31668169-31668246)
chr2 (66-143)||(7087789-7087866)
chr2 (66-143)||(8289203-8289280)
chr2 (31-64)||(4199636-4199669)
chr2 (31-64)||(7087772-7087805)
chr2 (31-64)||(8289264-8289297)
chr2 (34-64)||(31668233-31668263)
[»] chr5 (23 HSPs)
chr5 (66-142)||(25061829-25061905)
chr5 (66-143)||(2496672-2496749)
chr5 (66-143)||(5625881-5625958)
chr5 (66-143)||(5896461-5896538)
chr5 (66-142)||(25084242-25084318)
chr5 (66-142)||(25142212-25142288)
chr5 (66-143)||(27820154-27820231)
chr5 (66-143)||(33405733-33405810)
chr5 (69-142)||(20880989-20881062)
chr5 (140-209)||(39366347-39366416)
chr5 (66-143)||(42830600-42830677)
chr5 (66-143)||(28472527-28472604)
chr5 (282-357)||(26904599-26904674)
chr5 (252-354)||(4324783-4324885)
chr5 (31-64)||(2496655-2496688)
chr5 (243-334)||(14055080-14055171)
chr5 (34-64)||(28472510-28472540)
chr5 (252-334)||(35636922-35637004)
chr5 (31-64)||(5896522-5896555)
chr5 (31-64)||(25061811-25061844)
chr5 (31-64)||(25084224-25084257)
chr5 (31-64)||(25142194-25142227)
chr5 (31-64)||(33405716-33405749)
[»] scaffold0360 (1 HSPs)
scaffold0360 (66-143)||(10247-10324)
[»] chr1 (5 HSPs)
chr1 (66-143)||(49912137-49912214)
chr1 (73-142)||(48344758-48344827)
chr1 (31-63)||(49912198-49912230)
chr1 (276-334)||(23765777-23765835)
chr1 (249-334)||(27394083-27394168)
[»] chr8 (4 HSPs)
chr8 (66-143)||(40844653-40844730)
chr8 (73-143)||(7829596-7829666)
chr8 (66-117)||(24953838-24953889)
chr8 (31-64)||(40844714-40844747)
[»] scaffold0027 (1 HSPs)
scaffold0027 (69-142)||(55807-55880)
[»] scaffold0321 (1 HSPs)
scaffold0321 (297-357)||(17669-17729)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Complemental strand, 43655065 - 43654608
Alignment:
Q  10 acatcatcattagtagtagtagccagactttctatggtattagtttgtgaatttgacacttgtgaagctgagttggttcagatttcattaacgaagtcat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  43655065 acatcatcattagtagtagtagccagactttctatggtattagtttgtgaatttggcacttgtgaagctgagttggtccagatttcattaacgaagtcat 43654966  T
Q  110 cgtcattaaaccatactgccagactttctatggtttgcgttttgcatgtcttgtgcggagcactccactttgttaatataatatatcattttagtttgtt 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654965 cgtcattaaaccatgctgccagactttctatggtttgcgttttgcatgtcttgtgcggagcactccactttgttaatataatatatcattttagtttgtt 43654866  T
Q  210 cnnnnnnntaattctcaaagcattctatctaagcttctagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatg 309  Q
    |       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654865 caaaaaaataattctcaaagcactctatctaagcttctagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatg 43654766  T
Q  310 gtagtcagagatggtggtcggaccccttaaaatgtctgggtatcgactagtcatgctttgttttttgttgtaacagattgactctgtgttctttatgagt 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43654765 gtagtcagagatggtggtcggaccccttaaaatgtttgggtatcggctagtcatgctttgttttttgttgtaacggattgactctgtgttctttatgagt 43654666  T
Q  410 ggtctcttcagcacaccttgtgctaaggagcgatttagtgtttaattttttattcttc 467  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43654665 ggtctctttagcacaccttgtgctaaggagcgattcagtgtttaattttttattcttc 43654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 27251857 - 27251933
Alignment:
Q  67 acttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27251857 acttatgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctactgccagactttctatggt 27251933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 28346990 - 28347066
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  28346990 cacttgtgaagctgagttggtccagatttcattaacgaaggcatcgtcattaaaccctgctgccagactttctatgg 28347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 26404253 - 26404330
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||    
T  26404253 cacttgtgaagttgagttggtccagatttcattaatgaagtcatcgtcattaaaccctgctgccagactttctatggt 26404330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 40755255 - 40755332
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||| |||||    
T  40755255 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttccatggt 40755332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 19480575 - 19480506
Alignment:
Q  140 tggtttgcgttttgcatgtcttgtgcggagcactccactttgttaatataatatatcattttagtttgtt 209  Q
    |||||||| ||||||||  |||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  19480575 tggtttgctttttgcataccttgtgcgggacactccactttgttaatattatatatcattttagtttgtt 19480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 26404314 - 26404347
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  26404314 gccagactttctatggtattagtttgtgaatttg 26404347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 27251917 - 27251950
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  27251917 gccagactttctatggtattagtttgtgaatttg 27251950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 39474469 - 39474553
Alignment:
Q  250 aaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    ||||||| ||| || ||| ||||||||||||||||||  ||| ||||  |||| | ||||||  |||||||||||||||||||||    
T  39474469 aaaaagtgaagcataattcttattggtggttgaaggcgaataacacctcttttatatatggttctcagagatggtggtcggaccc 39474553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 28347051 - 28347084
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||| |||||||||||||||||    
T  28347051 gccagactttctatgggattagtttgtgaatttg 28347084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 249 - 438
Target Start/End: Original strand, 25725855 - 25726046
Alignment:
Q  249 gaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgg 348  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||| |||    
T  25725855 gaaaaagttaagtatcattcttattggtggttgaaggctcatagcaccatttttgtttttggtagtcagagatggtggtcataccccttaaaatgtatgg 25725954  T
Q  349 gtatcgactagtcatgctttg-ttttttgttgtaacagattgactctgtgttctttat-gagtggtctcttcagcacaccttgtgctaagga 438  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||||||| |||||||| | |||||||||||| |||||||||| |||||||||    
T  25725955 gtatcggctagtcttgctttgatttttggttgtaacagattgactctatgttctttttggagtggtctctttagcacaccttatgctaagga 25726046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 255 - 444
Target Start/End: Original strand, 17272135 - 17272320
Alignment:
Q  255 gttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgggtatcg 354  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||||||||||     |||||||||||||||| ||||| |||| ||| ||||||||||    
T  17272135 gttaagtatcattcttattgatggttgaaggctaatagcaccatttttgtgta-----gtcagagatggtggtcagaccctttaacatggctgggtatcg 17272229  T
Q  355 actagtcatgcttt-gttttttgttgtaacagattgactctgtgttctttatgagtggtctcttcagcacaccttgtgctaaggagcgatt 444  Q
    |||||| ||||||| |||||| |||||| | ||||| |||| ||| |||| ||||||||||| | |||||| |||||||| |||| |||||    
T  17272230 actagttatgctttggtttttggttgtatctgattggctctttgtactttttgagtggtctcgttagcacaacttgtgctcaggaacgatt 17272320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 21179604 - 21179681
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  21179604 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 21179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 49003877 - 49003954
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  49003877 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 49003954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 51799156 - 51799079
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  51799156 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccttgctgccagactttctatggt 51799079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 39506586 - 39506509
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  39506586 cacttgtgaagttgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 39506509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 47096574 - 47096501
Alignment:
Q  69 ttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  47096574 ttgtgaagctgaattggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatgg 47096501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 53136895 - 53136968
Alignment:
Q  69 ttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  53136895 ttgtgaagctgaattggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatgg 53136968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 30892043 - 30892113
Alignment:
Q  73 gaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||||||| ||||| ||||| ||||| |||||||||||||||||||||| | |||||||| ||||||||||    
T  30892043 gaagctgaattggtccagatatcattgacgaagtcatcgtcattaaaccctgctgccagattttctatggt 30892113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 21179665 - 21179698
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  21179665 gccagactttctatggtattagtttgtgaatttg 21179698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 39506525 - 39506492
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  39506525 gccagactttctatggtattagtttgtgaatttg 39506492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 49003938 - 49003971
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  49003938 gccagactttctatggtattagtttgtgaatttg 49003971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 51799095 - 51799062
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  51799095 gccagactttctatggtattagtttgtgaatttg 51799062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 4964007 - 4963949
Alignment:
Q  299 ttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgggtatcgact 357  Q
    ||||||||| |||  ||||||||||||||||||||| |||   ||||||||||||||||    
T  4964007 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgact 4963949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 14306967 - 14306857
Alignment:
Q  247 tagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtct 346  Q
    |||||||||  || |||||||| | ||||||||| || ||| ||| || || ||||||||| |||  |||||||||||||||| |||| |||   ||| |    
T  14306967 tagaaaaagcaaaatatcatttgttttggtggttaaaagctaataacatcaattttgtgtacggttctcagagatggtggtcgaaccctttattttgttt 14306868  T
Q  347 gggtatcgact 357  Q
    |||||||||||    
T  14306867 gggtatcgact 14306857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 30793598 - 30793711
Alignment:
Q  241 agcttctagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaa 340  Q
    ||||| |||| |||||||| | | ||| |||||||||| |||||||  ||| |||   |||||| | |||||||||| ||||||||||||| || || |     
T  30793598 agcttatagataaagttaaattttattcttattggtggctgaaggcaaataacacttcttttgtatttggtagtcagcgatggtggtcggagcctttgag 30793697  T
Q  341 atgtctgggtatcg 354  Q
    |||| |||||||||    
T  30793698 atgtttgggtatcg 30793711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 218 - 438
Target Start/End: Original strand, 48498469 - 48498690
Alignment:
Q  218 taattctcaaagcattctatctaagcttctagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcag 317  Q
    |||||||||||||  ||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48498469 taattctcaaagctctctgtctgagcttctaaaagaaattaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtactcag 48498568  T
Q  318 agatggtggtcggaccccttaaaatgtctgggtatcgactagtcatgcttt-gttttttgttgtaacagattgactctgtgttctttatgagtggtctct 416  Q
    ||||||||||||||||| |||   ||  ||||||||| ||||||||||||| | |||| |||||| |  ||||||| |||||||||| ||||||||||||    
T  48498569 agatggtggtcggacccgttagcttgcttgggtatcggctagtcatgctttgggttttggttgtatctaattgactttgtgttctttgtgagtggtctct 48498668  T
Q  417 tcagcacaccttgtgctaagga 438  Q
    | ||||||||||||| ||||||    
T  48498669 ttagcacaccttgtgataagga 48498690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 43632677 - 43632600
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||    
T  43632677 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccctgctgccatactttctatggt 43632600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 42606098 - 42606175
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||    
T  42606098 cacttgtgaagctgagttggtacagatttcattaacgaagtcatcgtcattaaaccctgctgccaaactttctatggt 42606175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 44804229 - 44804152
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||||||||||||||  | |||||||||||||||||||    
T  44804229 cacttgtaaagctgagttggaccagatttcactaacgaagtcatcgtcattaaactctgctgccagactttctatggt 44804152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 21063738 - 21063661
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||||||  |||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||| ||| ||||||    
T  21063738 cacttgttgagctgagttggtccagatttcattaaagaagtcatcgtcattaaaccctgctgccagattttgtatggt 21063661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 35306731 - 35306655
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||| | |||||| ||||||||||||    
T  35306731 cacttgtgaagctgagttggtccagatttcattaacgagatcatcgtca-taaaccctgctgccaaactttctatggt 35306655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 44804168 - 44804135
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  44804168 gccagactttctatggtattagtttgtgaatttg 44804135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 25124393 - 25124311
Alignment:
Q  252 aaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    |||||||||| ||||||||||||||||||||||| | ||      | ||||||||||| | ||||||||||||| ||||||||    
T  25124393 aaagttaagtttcatttttattggtggttgaaggttaatgatgttagttttgtgtatgattgtcagagatggtgatcggaccc 25124311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 35306671 - 35306638
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||| |||||||||||||||||||||||||||||    
T  35306671 gccaaactttctatggtattagtttgtgaatttg 35306638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 42606159 - 42606192
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||| |||||||||||||||||||||||||||||    
T  42606159 gccaaactttctatggtattagtttgtgaatttg 42606192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 43632616 - 43632583
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||| |||||||||||||||||||||||||||||    
T  43632616 gccatactttctatggtattagtttgtgaatttg 43632583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 7685019 - 7685096
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  7685019 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 7685096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 31157264 - 31157187
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  31157264 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 31157187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 13216012 - 13216081
Alignment:
Q  140 tggtttgcgttttgcatgtcttgtgcggagcactccactttgttaatataatatatcattttagtttgtt 209  Q
    |||||||| ||| ||||  |||||| || |||||||||||||||||||  |||||||||||| |||||||    
T  13216012 tggtttgcttttggcataccttgtgaggggcactccactttgttaatactatatatcatttttgtttgtt 13216081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 31157203 - 31157170
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  31157203 gccagactttctatggtattagtttgtgaatttg 31157170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 4199575 - 4199652
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  4199575 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 4199652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 31668169 - 31668246
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  31668169 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccatgctgctagactttctatggt 31668246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 7087866 - 7087789
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||    
T  7087866 cacttgtgaagctgagttggtccagatttcattaaggaagtcatcgtcattaaaccctgctgccagactttctatggt 7087789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 8289203 - 8289280
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  8289203 cacttgtgaagctaagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 8289280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 4199636 - 4199669
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  4199636 gccagactttctatggtattagtttgtgaatttg 4199669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 7087805 - 7087772
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  7087805 gccagactttctatggtattagtttgtgaatttg 7087772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 8289264 - 8289297
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  8289264 gccagactttctatggtattagtttgtgaatttg 8289297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 31668233 - 31668263
Alignment:
Q  34 agactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||||||||||||||||||    
T  31668233 agactttctatggtattagtttgtgaatttg 31668263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 25061905 - 25061829
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  25061905 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatgg 25061829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 2496749 - 2496672
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  2496749 cacttgtgaagctaagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatggt 2496672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 5625881 - 5625958
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  5625881 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatggt 5625958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 5896461 - 5896538
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  5896461 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatggt 5896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 25084318 - 25084242
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  25084318 cacttgtgaagctaagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatgg 25084242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 25142288 - 25142212
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  25142288 cacttgtgaagctaagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagactttctatgg 25142212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 27820154 - 27820231
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||    
T  27820154 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcgttaaaccctgctgccagattttctatggt 27820231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 33405810 - 33405733
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||    
T  33405810 cacttgtgaagctgagttggtacagattttattaacgaagtcatcgtcattaaaccctgctgccaaactttctatggt 33405733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 20881062 - 20880989
Alignment:
Q  69 ttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  20881062 ttgtgaagctgaattggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatgg 20880989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 39366347 - 39366416
Alignment:
Q  140 tggtttgcgttttgcatgtcttgtgcggagcactccactttgttaatataatatatcattttagtttgtt 209  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  39366347 tggtttgctttttgcatgccttgtgcgaggcactccactttgttaatataatatatcattttagtttgtt 39366416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 42830677 - 42830600
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| | |||||||| ||||||||||    
T  42830677 cacttgtgaagctgagttggtccaaatttcattaacgaagtcatcgtcgttaaaccctgctgccagattttctatggt 42830600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 28472604 - 28472527
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||  ||||||||||| || ||||||||||||||||||||||| ||||||| | |||  ||||||||||||||    
T  28472604 cacttgtggggctgagttggtccatatttcattaacgaagtcatcgtcgttaaaccctgctgttagactttctatggt 28472527  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 26904599 - 26904674
Alignment:
Q  282 aaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgggtatcgact 357  Q
    |||||||||| |||||| ||||||||||||  |||||| |||||||||||||  ||| | ||| ||||||||||||    
T  26904599 aaggctcataacaccatgtttgtgtatggttctcagagttggtggtcggaccatttacattgtttgggtatcgact 26904674  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 4324783 - 4324885
Alignment:
Q  252 aaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgggta 351  Q
    |||||||| | |||||  ||||| ||||| ||||| || | ||| |||||||||||||||||||||  || |||||||||||| || |||||| ||| ||    
T  4324783 aaagttaaatttcattcgtattgatggttaaaggcacacaacactatttttgtgtatggtagtcagcaatagtggtcggaccctttgaaatgtttggtta 4324882  T
Q  352 tcg 354  Q
    |||    
T  4324883 tcg 4324885  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 2496688 - 2496655
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    ||||||||||||||||||||||||||||||||||    
T  2496688 gccagactttctatggtattagtttgtgaatttg 2496655  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 14055080 - 14055171
Alignment:
Q  243 cttctagaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    |||||||||||||  || |||||||  | |||||||||||| | | ||| ||||| |||||||||||||  ||| ||||||||| |||||||    
T  14055080 cttctagaaaaagcaaaatatcattcgttttggtggttgaaagataataacaccaattttgtgtatggttctcaaagatggtggccggaccc 14055171  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 28472540 - 28472510
Alignment:
Q  34 agactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||||||||||||||||||    
T  28472540 agactttctatggtattagtttgtgaatttg 28472510  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 35637004 - 35636922
Alignment:
Q  252 aaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    |||||||||||| ||| |||  |||||||||||||| ||| ||||| ||||||||||| | |||| ||||   ||||||||||    
T  35637004 aaagttaagtataattcttaccggtggttgaaggctaataacaccacttttgtgtatgcttgtcaaagatcacggtcggaccc 35636922  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 5896522 - 5896555
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||||| |||||||||||||||||||||||||||    
T  5896522 gccagattttctatggtattagtttgtgaatttg 5896555  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 25061844 - 25061811
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||| |||||||||||||||||    
T  25061844 gccagactttctatgggattagtttgtgaatttg 25061811  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 25084257 - 25084224
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||| |||||||||||||||||    
T  25084257 gccagactttctatgggattagtttgtgaatttg 25084224  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 25142227 - 25142194
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||||||||||||||| |||||||||||||||||    
T  25142227 gccagactttctatgggattagtttgtgaatttg 25142194  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 33405749 - 33405716
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||| |||||||||||||||||||||||||||||    
T  33405749 gccaaactttctatggtattagtttgtgaatttg 33405716  T

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Target: scaffold0360 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 10324 - 10247
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
T  10324 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatggt 10247  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 49912137 - 49912214
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  49912137 cacttgtgaagctgagttggtccagatttcattaacgaagtcatcgttattaaaccctcctgccagactttctatggt 49912214  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 48344758 - 48344827
Alignment:
Q  73 gaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    |||||||| ||||| || || ||||| |||||||||||||||||||||| | |||||||| |||||||||    
T  48344758 gaagctgaattggtccatatatcattgacgaagtcatcgtcattaaaccctgctgccagattttctatgg 48344827  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 49912198 - 49912230
Alignment:
Q  31 gccagactttctatggtattagtttgtgaattt 63  Q
    |||||||||||||||||||||||||||||||||    
T  49912198 gccagactttctatggtattagtttgtgaattt 49912230  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 23765835 - 23765777
Alignment:
Q  276 tggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    |||||||||||| ||| ||||| |||||||||||||  ||| |||| ||||||||||||    
T  23765835 tggttgaaggctaataacaccacttttgtgtatggttctcaaagatagtggtcggaccc 23765777  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 27394083 - 27394168
Alignment:
Q  249 gaaaaagttaagtatcatttttattggtggttgaaggctcatagcaccatttttgtgtatggtagtcagagatggtggtcggaccc 334  Q
    |||||||||||||||  || ||||||||||||||||||| |||    || |||||| |||||   |||| ||||||||||||||||    
T  27394083 gaaaaagttaagtatacttcttattggtggttgaaggctaataatgtcacttttgtatatggctctcagtgatggtggtcggaccc 27394168  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 40844653 - 40844730
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  40844653 cacttgtgaagctgagttggtctagatttcattaacgaaatcatcgtcattaaaccatgctgccaaactttctatggt 40844730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 7829666 - 7829596
Alignment:
Q  73 gaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatggt 143  Q
    |||||||| |||||  |||| ||||| |||||||||||||||||||||| | |||||||| ||||||||||    
T  7829666 gaagctgaattggtctagatatcattgacgaagtcatcgtcattaaaccctgctgccagattttctatggt 7829596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 24953838 - 24953889
Alignment:
Q  66 cacttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcatta 117  Q
    |||||||||||||||||| ||  ||||||||| |||||||||||| ||||||    
T  24953838 cacttgtgaagctgagttcgtctagatttcatcaacgaagtcatcatcatta 24953889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 40844714 - 40844747
Alignment:
Q  31 gccagactttctatggtattagtttgtgaatttg 64  Q
    |||| |||||||||||||||||||||||||||||    
T  40844714 gccaaactttctatggtattagtttgtgaatttg 40844747  T

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Target: scaffold0027 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 55807 - 55880
Alignment:
Q  69 ttgtgaagctgagttggttcagatttcattaacgaagtcatcgtcattaaaccatactgccagactttctatgg 142  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  55807 ttgtgaagctgaattggtccagatttcattaacgaagtcatcgtcattaaaccctgctgccagattttctatgg 55880  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 17669 - 17729
Alignment:
Q  297 atttttgtgtatggtagtcagagatggtggtcggaccccttaaaatgtctgggtatcgact 357  Q
    ||||||||||| |||| |||||| |||||||||||||| ||  | ||| ||||||||||||    
T  17669 atttttgtgtacggtactcagagttggtggtcggaccctttgcattgtttgggtatcgact 17729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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