View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_high_9 (Length: 487)
Name: NF18651_high_9
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 23 - 465
Target Start/End: Complemental strand, 28707315 - 28706870
Alignment:
| Q |
23 |
accatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatca---gaaagaatgg |
119 |
Q |
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| T |
28707315 |
accatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatcatcagaaagaatgg |
28707216 |
T |
|
| Q |
120 |
aattctcaattgattaatgctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28707215 |
aattctcaattgattaatgctaccttccttgcttttaaggctcaacaaatcctttaaatccctctttccctaaataatccgcaagatcgcttcatatggg |
28707116 |
T |
|
| Q |
220 |
gagagaataacgaatgtgaattttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatctgtcatacctcaaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28707115 |
gagagaataacgaatgtgaattttctgttaagtctgcttacaaattccaaaaacgaagaaatgagatgctcaactccaatcaatctgtcatacctcaaga |
28707016 |
T |
|
| Q |
320 |
gagtaatgaatggagtaaactatggaagcttaaaactattatgcgtcaaatgcaacttatgtggtgtattctacataaaaggttgccggtaagagagtct |
419 |
Q |
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| T |
28707015 |
gagtaatgaatggagtaaactatggaagcttaaaactattatgtgtcaaatgcaacttatgtggtgtattctacataaaaggttgccggtaagagagtct |
28706916 |
T |
|
| Q |
420 |
ctatttaaaaaaggagttaattgttccccgttgtggtgtgtctgtg |
465 |
Q |
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| T |
28706915 |
ctatttaaaaaaggagttaattgttccccgttgtggtgtgtctgtg |
28706870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 24704337 - 24704233
Alignment:
| Q |
23 |
accatatcaacaaggtcatagaatttggtccccttaacctccaaattatgttctgtgaaatgtggcagacctaatacatccagatcagaaagaatggaat |
122 |
Q |
| |
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||||||||| ||||||| |||||||||||| ||| |||||||||||| | |||| | ||| |||||| | ||||||||| |||||| |||||||| |||| |
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| T |
24704337 |
accatatcagcaaggtcgtagaatttggtctcctcaacctccaaattgtattctttcaaaagtggca-aactaatacattcagatcggaaagaatagaat |
24704239 |
T |
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| Q |
123 |
tctcaa |
128 |
Q |
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|||||| |
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| T |
24704238 |
tctcaa |
24704233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 1171499 - 1171541
Alignment:
| Q |
341 |
atggaagcttaaaactattatgcgtcaaatgcaacttatgtgg |
383 |
Q |
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||||||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
1171499 |
atggaagcttaaaacaattctgcgtcatatgcaacttatgtgg |
1171541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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