View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_low_1 (Length: 666)
Name: NF18651_low_1
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 90 - 649
Target Start/End: Complemental strand, 50631419 - 50630859
Alignment:
| Q |
90 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattataggtatgtgagac |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50631419 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattatatgtatgtgagac |
50631320 |
T |
|
| Q |
190 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggag |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50631319 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggaa |
50631220 |
T |
|
| Q |
290 |
cttagataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattgttggatgaatatatgtgtgtggggcattatcatctaa |
389 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
50631219 |
cttggataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattattggatgaatatgtgtgt---gggcatcatcatctaa |
50631123 |
T |
|
| Q |
390 |
tgagctaacttttaagagcgatattcatttagttggagtatttatttaacatgcacttccttcaagatattacttgttgttaagtagtacatcattgggg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50631122 |
tgagctaacttttaagagcgatattcatttagttggagtatttaattaacatgcacttccttcaagatattacttgttgttaagtagtacatcattgggg |
50631023 |
T |
|
| Q |
490 |
caaatgtaacaatcaaatttgaagagttttacaaataa----taggtgagcgtttggtagtagtgaaagttgaaggggtgatttgtggttaaaatggtgc |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50631022 |
caaatgtaacaatcaaatttgaagagttttacaaataataggtaggtgagcgtttggtagtagtgaaagttgaaggggtgatttgtggttaaaatggtgc |
50630923 |
T |
|
| Q |
586 |
tagagatagtgagatagcattgtgtgattgtcataacataacagatgagtgaagaagaggtaac |
649 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50630922 |
tggagatagtgagatagcattgtgtgattgtcataacataacagatgagtgaagaagaggtaac |
50630859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University