View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_11 (Length: 461)
Name: NF18651_low_11
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 110 - 414
Target Start/End: Complemental strand, 9691429 - 9691124
Alignment:
| Q |
110 |
tgaacttgaaggaagaataataagtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcatt-actctttct---caaa |
205 |
Q |
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| T |
9691429 |
tgaacttgaaggaagaataataagagatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcatttactctttcttctcaaa |
9691330 |
T |
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| Q |
206 |
tgcctcttttcaattgacaaggtgagttcattaataggcttcatttctaagttagaccaagttttgttctgaatgggaataatgaaagtatgtgaaggtg |
305 |
Q |
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| T |
9691329 |
ctcctcttttcaattgacaaggtgagttcattaataggattcatttctaagttagaccaagttttgttgtgaatggaaataatgaatgtatgtgaaggtg |
9691230 |
T |
|
| Q |
306 |
agaactagtgtttgagaaaccaatagtcagaataacataatttaagagagtttaggaattgtttgaattaatgaatttatacctaatcattatatatttt |
405 |
Q |
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| T |
9691229 |
agaactagtgtttgagaaactaatggtcggaataacatga-ttaagagagtttaggaattgtttgaattaatggatttatgcctaatcat--tatgtttt |
9691133 |
T |
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| Q |
406 |
tcatgtatg |
414 |
Q |
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||||||||| |
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| T |
9691132 |
tcatgtatg |
9691124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 9691638 - 9691553
Alignment:
| Q |
28 |
taagggacaattactctcaattataaataggcattatacaaggtnnnnnnntcagaaattccatgttgcctcttctcctctctgaac |
114 |
Q |
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| T |
9691638 |
taagggacaattactcacaattataaataggcattatacaa-gttaaaaaatcagaaattctatgttgcctcttctcctctctgaac |
9691553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 115 - 374
Target Start/End: Original strand, 1933460 - 1933720
Alignment:
| Q |
115 |
ttgaaggaagaataataa-gtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcat-tactct---ttctcaaatgcc |
209 |
Q |
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| T |
1933460 |
ttgaaggaagaataataaagagatgaaattggagctagggttacaatgttaagaggttaatctagttttcatcatcatctaccctttcttctcaaactcc |
1933559 |
T |
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| Q |
210 |
tcttttcaattgacaaggtgagttcattaataggcttcatttctaagttagaccaagttttgttctgaatgggaataatgaaagtatgtgaaggtgagaa |
309 |
Q |
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| T |
1933560 |
tc-tttcaattgacgaggtgagttctttaataggctttatttttaagttaggctaagttttgttgtgaacgggaataatgaatgcatgtgatggtgagaa |
1933658 |
T |
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| Q |
310 |
ctagtgtttgagaaaccaatagtcagaataacataatttaagagagtttaggaattgtttgaatt |
374 |
Q |
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| T |
1933659 |
cgagggtttgagaaaccaatgataggaataacataattaaa---agtttaggaattgtgtgaatt |
1933720 |
T |
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