View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_15 (Length: 414)
Name: NF18651_low_15
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 17522529 - 17522923
Alignment:
| Q |
7 |
actaatacatcgacatggataataatttcacaaaatgacgtaattgaatgcaatcacaaatgtcgtgttgacactataacttttaatactattatcattt |
106 |
Q |
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| T |
17522529 |
actaatacatcgacatcgataataatttcacaaaatgacgtaattgaatgcaatcacaaatgtcgtgttgacactataacttttaatactattatcattt |
17522628 |
T |
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| Q |
107 |
attatttatatttaaaaaatgtattaaaaacggttaatatcagcaacaaaactggattagttacattaacaaatttggtttatcgttaatcaagtggatt |
206 |
Q |
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| T |
17522629 |
attatttatatttaaaaaatgtattaaaaacggttaatatcagcaacaaaactggattagttacattaacaaatttggtttatcgttaatcaagtggatt |
17522728 |
T |
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| Q |
207 |
acgaatcacgaaacgagccatgcaaaactgaaatcaacaacaacaagaacttcaaaaccaacctgtctaaaaatattgccggagctaagaggactttctt |
306 |
Q |
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| T |
17522729 |
acgaatcacgaaacgagccatgcaaaactgaaatcaacaacaacaagaacttcaaaaccaacctgtctaaaaatattgccggagctaagaggactttctt |
17522828 |
T |
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| Q |
307 |
tgcttctccggtgagcgggaactgaaggacgataagtgaatttgaaatcgacagtaacattttcacgatcattgatgacgtcattaccaccattc |
401 |
Q |
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| T |
17522829 |
tgcttctccggtgagcgggaactgaaggacgataagtgaatttgaaatcgacagcaacattttcacgatcattgatgacgtcattaccaccattc |
17522923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 18622408 - 18622461
Alignment:
| Q |
11 |
atacatcgacatggataataatttcacaaaatgacgtaattgaatgcaatcaca |
64 |
Q |
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| T |
18622408 |
atacaccgacatcgataataatttaagaaaatgacataattaaatgcaatcaca |
18622461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 52332558 - 52332493
Alignment:
| Q |
286 |
cggagctaagaggactttctttgcttctccggtgagcgggaactgaaggacgataagtgaatttga |
351 |
Q |
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| T |
52332558 |
cggagctgagtggactttccttgattctacgatgagcgggaacagaaggccggtaagtgaatttga |
52332493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 43188618 - 43188670
Alignment:
| Q |
24 |
gataataatttcacaaaatgacgtaattgaatgcaatcacaaatgtcgtgttg |
76 |
Q |
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| T |
43188618 |
gataataatttgagaaaatgacataattcaatgcgatcacaaaagtcgtgttg |
43188670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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