View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_17 (Length: 399)
Name: NF18651_low_17
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 14758719 - 14759088
Alignment:
| Q |
13 |
aatattgtaaatccttttaaggatgtaaaaataagtatatacctctataattgttttaatttcgctaacttcttgtgctgcatcctccgcagacctgtat |
112 |
Q |
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| T |
14758719 |
aatattgtaaatccttttaaggatgtaaaaataagtatatacctctataattgttttaatttcgctaacttcttgcgctgcatcctccgcagacctgtat |
14758818 |
T |
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| Q |
113 |
ttatttttctcattttgcagttctacgtaccacttaatcaaatctcgttgcttcattccggacaaaccagttcctgcaacacaatgcctcagaaaattca |
212 |
Q |
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| T |
14758819 |
ttatttttctcattttgcagttctacgtaccacttaatcaaatctcgttgcttcattccggacaaaccagttcctgcaatacaatgccgcagaaaattca |
14758918 |
T |
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| Q |
213 |
cctttcaatatgtgatcacattcgacacttggtagtatccctgacaaaatattcatataaataaatcttatctacatcagagacaatggtatgcaagttt |
312 |
Q |
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| T |
14758919 |
cctttcaatatgtgatcacattcgacacttggtagtatccctgacaaaatattcatataaataaatcttatctacatcagagacaatggtaggcaagttt |
14759018 |
T |
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| Q |
313 |
cagaacctgaatagtatggtatggaattaatttttacaatgtacaataattaaactttgaagtataatat |
382 |
Q |
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| T |
14759019 |
cagaacctgaatagtatggtatggaattaatttttacaatgtacaataattaaactatgaagtataatat |
14759088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 37645554 - 37645615
Alignment:
| Q |
107 |
ctgtatttatttttctcattttgcagttctacgtaccacttaatcaaatctcgttgcttcat |
168 |
Q |
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| T |
37645554 |
ctgtaattatttttctcattttgctggtctacataccatttaatcaaatcccgttgcttcat |
37645615 |
T |
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