View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_19 (Length: 377)
Name: NF18651_low_19
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 43918377 - 43918718
Alignment:
| Q |
18 |
atgaaatccgacaggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctaca |
117 |
Q |
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| T |
43918377 |
atgaaagccgacaggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctaca |
43918476 |
T |
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| Q |
118 |
ctagaataaatatcaacatcgtctcttgtggcacacgactcaacatacaactccttgagagagttattattgtcaattgccattgttggttcttggacta |
217 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43918477 |
ctagaataaatatcaacatcgtctcttgcggcacgcgactcaacatacaactctttgagagagttattattgtcaattgccattgttggttcttggacta |
43918576 |
T |
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| Q |
218 |
aattctcatcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgtcttcctct |
317 |
Q |
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| T |
43918577 |
aattctcatcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactacctttttgctgttttcttct |
43918676 |
T |
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| Q |
318 |
cttatacgtcagtccatggcttccaaaattgaaagatgcttc |
359 |
Q |
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| T |
43918677 |
cttatacgtcagtccatggcttccaaaattgaaagatgcttc |
43918718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 53105658 - 53106013
Alignment:
| Q |
18 |
atgaaatccgacaggggacagattggctaaagcacccatagcttcagcagctatttgagtgtctaagccaatatcagacatgtcttctgtacctgctaca |
117 |
Q |
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|||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
53105658 |
atgaaagccggcaggggacagattggctaaagcatccatagcttcagcagctatttgagtgtctaagccaatatcag-catgtcttctgtatgtgctaca |
53105756 |
T |
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| Q |
118 |
ctagaataaatatcaacatcgtctcttgtggcacacgactcaacatacaactccttgagagagttattattgtcaattgccattgttggttcttggacta |
217 |
Q |
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|| | |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53105757 |
cttgtataaatatcaacatcgcctcttgcggcacatgactcaacatacaactccttgagagagttattattgtcagttgccattgttggttcttggacta |
53105856 |
T |
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| Q |
218 |
aattctcat---------------cactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactaccttt |
302 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53105857 |
aattctcatcacattgattacttgcactatagtttccttggttctcatcacatccattacttgcactacattttccttggttctgaagacgactaccttt |
53105956 |
T |
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| Q |
303 |
ttgctgtcttcctctcttatacgtcagtccatggcttccaaaattgaaagatgcttc |
359 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53105957 |
ttgctgtcttcttctgttatacgtcagtccatggcttccaaaactgaaagatgcttc |
53106013 |
T |
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