View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_2 (Length: 639)
Name: NF18651_low_2
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 1192234 - 1192649
Alignment:
| Q |
20 |
ttgggcacacagtggatgaagtcaaaaaagtgactatnnnnnnngtgtaatctagtatgcacacatttggtgtgaaaatgaactcctttggtgtaacatg |
119 |
Q |
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| T |
1192234 |
ttgggcacacagtggattaagtcaaaaaagtgactataaaaaaagtgtaatctaatatgcacacaattggtatgaaaatgaactc-tttggtgtaacatg |
1192332 |
T |
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| Q |
120 |
tcaagtgtcttctaactagcttaaaaaactttttcttctggtattttgagttcatgaacgctcaagactttccaaacataactacttttttaaaactctc |
219 |
Q |
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| T |
1192333 |
tcaagtgtcttctaactagcttaaaaaactttttcttctcgtattttgagttcttgaacactcaagactttctaaacataactacttctttaaaactctc |
1192432 |
T |
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| Q |
220 |
tgagcacacttttggtatggtagttatgaaataatttgaattctaaaatgacttcaagaatgcttatcttcgagtccatctg-------tactggtcttc |
312 |
Q |
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| T |
1192433 |
tgagcacacttttggtatggtagttatgaaataatttgaattctcaaatgacttcaagaatgcttatcttcaagtccatctgtattttctactcatcttc |
1192532 |
T |
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| Q |
313 |
aaagatgctctttgaattcttgtac-------agaggcactttgcttagaatgttacttttcgaggaagattcacatatcaccaccaatttgttggatgt |
405 |
Q |
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| T |
1192533 |
aaagattctctttgaattcttgtacttgtagtagaggcactttgcttagaatgtcactttttgatgaagattcacatat---caccaatttgttggatgt |
1192629 |
T |
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| Q |
406 |
tattatcctttgaaaaatgt |
425 |
Q |
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| T |
1192630 |
tattatcctttgaaaaatgt |
1192649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 493 - 639
Target Start/End: Original strand, 1192789 - 1192937
Alignment:
| Q |
493 |
ccaaacgaaggattcgtaaatcatatcctttaggtttgacaattccctcgagagattattaatcaacctca--aggatatagtgcagtgtctctctaaaa |
590 |
Q |
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| T |
1192789 |
ccaaacgaagtattcttaaatcgtattttttaggtttaacaattccctcgagagattattaatcagatatagtacgatatagtgcggtgtctgtctaaaa |
1192888 |
T |
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| Q |
591 |
attccatgattcttgttttatagaacaaatttaaacatttaaattggaa |
639 |
Q |
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| T |
1192889 |
attccatgattcttgttttatagaacaaatttaaacatttaaattggaa |
1192937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 1192573 - 1192612
Alignment:
| Q |
454 |
tttgcttagaatgtcacttttcgacgaagattcacatatc |
493 |
Q |
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| T |
1192573 |
tttgcttagaatgtcactttttgatgaagattcacatatc |
1192612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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