View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_20 (Length: 367)
Name: NF18651_low_20
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 107 - 352
Target Start/End: Original strand, 15970175 - 15970420
Alignment:
| Q |
107 |
gtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctca |
206 |
Q |
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| T |
15970175 |
gtagatacgagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctca |
15970274 |
T |
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| Q |
207 |
tgtccttgaattcttgcgttacctcgaccaatttggaaaaactaaggttcatactcagatttgtcccttttatggacatccaaatccacctgcaccatgt |
306 |
Q |
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| T |
15970275 |
tgtccttgaattcttgcgatacctcgaccaatttggaaaaactaaggttcatactctgatttgtcccttttatggacatccaaatccacctgcatcatgt |
15970374 |
T |
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| Q |
307 |
ccatgtcctcttcgccaagcatggggtagtcttgatgcactcattg |
352 |
Q |
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| T |
15970375 |
ccatgtcctcttcgccaagcgtggggtagtcttgatgcacttattg |
15970420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 115 - 345
Target Start/End: Complemental strand, 33672318 - 33672088
Alignment:
| Q |
115 |
gagaatcaaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttg |
214 |
Q |
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| T |
33672318 |
gagaatcaaaaaagaagagactggaacacttttggtcaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagcacatgttcttg |
33672219 |
T |
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| Q |
215 |
aattcttgcgttacctcgaccaatttggaaaaactaaggttcatactcagatttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcc |
314 |
Q |
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| T |
33672218 |
aatttttaaggtatcttgatcagtttgggaaaactaaggttcattcacagatttgtccattttttggtcatccaaacccacctgcaccttgtccttgtcc |
33672119 |
T |
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| Q |
315 |
tcttcgccaagcatggggtagtcttgatgca |
345 |
Q |
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| T |
33672118 |
tctacgacaagcttggggaagtcttgatgca |
33672088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 30504064 - 30503982
Alignment:
| Q |
265 |
atttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcctcttcgccaagcatggggtagtcttgatgcact |
347 |
Q |
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| T |
30504064 |
atttgtccattctatggacatccaaaccctccagcaccatgtccatgtccattaagacaagcttggggtagtcttgatgcact |
30503982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 35608696 - 35608745
Alignment:
| Q |
289 |
aatccacctgcaccatgtccatgtcctcttcgccaagcatggggtagtct |
338 |
Q |
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| T |
35608696 |
aatccaccagctccttgtccatgtcctcttcgtcaagcgtggggtagtct |
35608745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 38980600 - 38980685
Alignment:
| Q |
265 |
atttgtcccttttatggacatccaaatccacctgcaccatgtccatgtcctcttcgccaagcatggggtagtcttgatgcactcat |
350 |
Q |
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| T |
38980600 |
atttgtccattttatgggcatccaaatccaccagcaccatgtccatgtcctctgaggcaagcatggggaagccttgatgcactcat |
38980685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 37974946 - 37975083
Alignment:
| Q |
121 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccaccactttcactctcacgttgtagtggagctcatgtccttgaattct |
220 |
Q |
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| T |
37974946 |
caaaagagacgtgattggaacacttttggtcaatacctaaaaaaccatcgtccaccattaacactctcacgttgtagtggtgcacatgttcttgagtttc |
37975045 |
T |
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| Q |
221 |
tgcgttacctcgaccaatttggaaaaactaaggttcat |
258 |
Q |
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| T |
37975046 |
ttcgttacttggatcagtttggaaaaaccaaggttcat |
37975083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 32002379 - 32002323
Alignment:
| Q |
121 |
caaaagagaagagattggaacacatttggacaatacctaagaaaccatagaccacca |
177 |
Q |
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| T |
32002379 |
caaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccacca |
32002323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 39556377 - 39556413
Alignment:
| Q |
120 |
tcaaaagagaagagattggaacacatttggacaatac |
156 |
Q |
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| T |
39556377 |
tcaaaagagaagagattggaacacttttggtcaatac |
39556413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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