View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_24 (Length: 332)
Name: NF18651_low_24
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 99 - 314
Target Start/End: Complemental strand, 9799342 - 9799127
Alignment:
| Q |
99 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
198 |
Q |
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| T |
9799342 |
tatactatctgttaaacttctggttacaccatagttaactagttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagc |
9799243 |
T |
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| Q |
199 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
298 |
Q |
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| T |
9799242 |
acagcttatagagtttgttagttacagatgttatacagttagatagcccctatataaacatatattgtaactaactcttatcattgaataacagaatata |
9799143 |
T |
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| Q |
299 |
cattttctgcattttt |
314 |
Q |
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|||||||||||||||| |
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| T |
9799142 |
cattttctgcattttt |
9799127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 139 - 312
Target Start/End: Complemental strand, 9790287 - 9790111
Alignment:
| Q |
139 |
agttgtgcaaattaacttgtgctctaagtttcctttaccaagtaccttacatagaatagcacagcttatagagtttgttagttacagatgttatacagtt |
238 |
Q |
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|||||||||| |||||||||||| ||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||| |
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| T |
9790287 |
agttgtgcaagttaacttgtgctttaagtttcccttaccatgtaccctacatagaatagcacaacttatagagtttgtcagttacagctgttatacagtt |
9790188 |
T |
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| Q |
239 |
ag---atagcccctatataaacatatattgtaactaactcttatcattgaataacagaatatacattttctgcattt |
312 |
Q |
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|| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9790187 |
agatcatatcctctatataaacatatattgtaactaactcacatcattgaataacagaatatacattttctgcattt |
9790111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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