View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_27 (Length: 317)
Name: NF18651_low_27
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 49284186 - 49284081
Alignment:
| Q |
202 |
attaatagaaccctaaacaaaatttttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
301 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49284186 |
attaatagaaccctaaacaaaaattttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttatctctcttctctatgag |
49284087 |
T |
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| Q |
302 |
gttcat |
307 |
Q |
| |
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|||||| |
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| T |
49284086 |
gttcat |
49284081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 53981344 - 53981451
Alignment:
| Q |
24 |
agtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattctaaa |
123 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |
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| T |
53981344 |
agtgtgagtagaccataataaaatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacagcctttccctaggctaaa |
53981443 |
T |
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| Q |
124 |
tggcacca |
131 |
Q |
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|||||||| |
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| T |
53981444 |
tggcacca |
53981451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 53975474 - 53975364
Alignment:
| Q |
20 |
atacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattc |
119 |
Q |
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||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| | |
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| T |
53975474 |
atacagtgtggatagaccataataagattaatgtatctcttcaatccagtggtcaaaaacaacccttcccatgatgggaaaaaacagcctttccccaagc |
53975375 |
T |
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| Q |
120 |
taaatggcacc |
130 |
Q |
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||||||||||| |
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| T |
53975374 |
taaatggcacc |
53975364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 49287660 - 49287594
Alignment:
| Q |
131 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaagagattg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49287660 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaggagattg |
49287594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 35153667 - 35153555
Alignment:
| Q |
20 |
atacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccccattc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||| | |
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| T |
35153667 |
atacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtgttcaaaaacagcctttcccatgatgggaaaaaacagcattt-cccaggc |
35153569 |
T |
|
| Q |
120 |
taaatggcaccaaa |
133 |
Q |
| |
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|||||||||||||| |
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| T |
35153568 |
taaatggcaccaaa |
35153555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 42757049 - 42757121
Alignment:
| Q |
227 |
ttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
301 |
Q |
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|||||||||||||||||||||||||| || |||| ||||||| | ||| |||| || ||||||||||||||||| |
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| T |
42757049 |
ttgatctaaatatattcctgaatcaacatgatagatcaattggaggatacgacctt--tctctcttctctatgag |
42757121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 17151090 - 17151017
Alignment:
| Q |
41 |
ataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccc |
114 |
Q |
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|||||||||||||| ||||| |||| |||||||||||| |||||||||| ||||||||| || |||||||| |
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| T |
17151090 |
ataagatcagtgtacctctttaatctagtggtcaaaaaataactttcccatggtgggaaaaaccagcctttccc |
17151017 |
T |
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