View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_low_3 (Length: 634)
Name: NF18651_low_3
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_3 |
 | |
|
| [»] chr6 (8 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 5 - 634
Target Start/End: Complemental strand, 27853472 - 27852843
Alignment:
| Q |
5 |
tcaggttatttttacccttcaatctttgatactctaatttctctcatcccaaaaattgctcctccaaattctttcaaaattttcaggcccatcagtttat |
104 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27853472 |
tcaggttattttgaccctgcaatctttgatactctaatttctctcatcccaaaaattgatcctccaaattctttcaaaattttcaggcccatcagtttat |
27853373 |
T |
|
| Q |
105 |
gcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27853372 |
gcaacattgtttataaaatcatcactaaagtcttggtcaaccaccttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctgg |
27853273 |
T |
|
| Q |
205 |
tagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatctt |
304 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27853272 |
tagaggcacttttgataatgcggttgtttttccggaaattgttcattttatgagaagatcgaagaagaaaaagggttttgcggccttcaagcttgatctt |
27853173 |
T |
|
| Q |
305 |
gaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgtta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27853172 |
gaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcattatgcattgtgtta |
27853073 |
T |
|
| Q |
405 |
cctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttatt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
27853072 |
cctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttatt |
27852973 |
T |
|
| Q |
505 |
catcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccattcaactctccaacaatgggtctcgattgtct |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27852972 |
catcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccattcaactctccaacaatgggcctcgattgtct |
27852873 |
T |
|
| Q |
605 |
caccttctttttgctgatgatgtccatctc |
634 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
27852872 |
caccttctttttgctgatgatgtccttctc |
27852843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 166 - 634
Target Start/End: Complemental strand, 12646337 - 12645869
Alignment:
| Q |
166 |
tactattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatca |
265 |
Q |
| |
|
||||||||||| ||||||||||| |||||| | |||||||||| ||| ||| |||| | |||||| | |||||| ||||| |||||||||||| |
|
|
| T |
12646337 |
tactattattgacccctaccaaagcagttttttgcctggtagaggcaccactgacaatgttgttgttttgcaggaaatcattcatcacatgagaagatca |
12646238 |
T |
|
| Q |
266 |
aagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggct |
365 |
Q |
| |
|
||||| || ||||||| || |||||| ||||| || ||| |||||| ||||||||||| || ||| ||| ||| | || ||||||||||| ||||| | |
|
|
| T |
12646237 |
aagaaaaagaagggttatgtggcctttaagctagaccttaaaaaggcttttgataatgtcaattggcttttccttcagtcatgccttcaagattttggtt |
12646138 |
T |
|
| Q |
366 |
tccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctca |
465 |
Q |
| |
|
| | |||||||||| ||| | |||||||||||||| || || || | ||| ||||| |||||||| || |||| |||||| ||||||||| ||||| |
|
|
| T |
12646137 |
tttcagacattacaattaagcttatcatgcattgtgtcacttcatccactctttctatcctttggaatgggaacattatgcctcttttcaagccatctca |
12646038 |
T |
|
| Q |
466 |
tggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgg |
565 |
Q |
| |
|
|||||| || |||||||| || | || | ||| || || || |||||||||||||||||||| ||| | |||||||| | |||| ||||| ||| |
|
|
| T |
12646037 |
tggtctcaggtaaggggatcccctctccccttatttgtttattctttgtatggaaaagctctctatttctatcaacaatgcagttcagcaaggagcctgg |
12645938 |
T |
|
| Q |
566 |
gaccccattcaactctccaacaatgggtctcgattgtctcaccttctttttgctgatgatgtccatctc |
634 |
Q |
| |
|
|||||||| ||| ||||| |||||| || | | ||||||||||||||||| |||||| ||| |||| |
|
|
| T |
12645937 |
gaccccatccaaaactccagcaatggtcctaggctttctcaccttctttttgcagatgatttccttctc |
12645869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 486
Target Start/End: Complemental strand, 24990875 - 24990702
Alignment:
| Q |
313 |
gtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctca |
412 |
Q |
| |
|
|||||||||||| | |||||||| ||||| || | |||||| || ||||| || || ||||| || | ||| |||||||||| ||||| |||||||| |
|
|
| T |
24990875 |
gtttgataatgtcagatgggatttccttaagtcttaccttcacgattttggttttccagacatcaccatcaaactcatcatgcactgtgtcacctcctcc |
24990776 |
T |
|
| Q |
413 |
attctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccc |
486 |
Q |
| |
|
| | | |||||| | |||||||| ||||||||||| |||||||||| | |||||||| ||| |||| ||||| |
|
|
| T |
24990775 |
actttttctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgaccc |
24990702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 480
Target Start/End: Complemental strand, 32725748 - 32725506
Alignment:
| Q |
238 |
ggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggatttt |
337 |
Q |
| |
|
|||||| ||||| |||||||||||||| || ||||| ||||| | || || ||||| ||||| || || || | ||||||||||| | ||||||||| |
|
|
| T |
32725748 |
ggaaatagttcactttatgagaagatctaaaaagaagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggatttt |
32725649 |
T |
|
| Q |
338 |
cttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaa |
437 |
Q |
| |
|
||||| || ||||| | || ||||| || || ||||| || | |||| | |||||||||||||| || || || | |||||||| | |||||||| | |
|
|
| T |
32725648 |
cttaattcttgcctccttgagtttggatttccggacatcaccatcaagcttatcatgcattgtgtcacatcatccacattctctattttatggaacggta |
32725549 |
T |
|
| Q |
438 |
acaaaatgccttctttcaagccttctcatggtctaagataagg |
480 |
Q |
| |
|
| |||||||| || || |||||||| |||| ||| ||| |||| |
|
|
| T |
32725548 |
ataaaatgccctcctttaagccttcccatgatctcagacaagg |
32725506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 329 - 486
Target Start/End: Complemental strand, 24894032 - 24893875
Alignment:
| Q |
329 |
tgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattcttt |
428 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||||| || || ||||| || | |||| |||||||||||||||| |||||||| | |||| || | | |
|
|
| T |
24894032 |
tgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaagctcatcatgcattgtgtcacctcctccacattctccatattat |
24893933 |
T |
|
| Q |
429 |
ggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccc |
486 |
Q |
| |
|
|||| || ||||||||||| |||||||||| | |||||||| ||| |||| ||||| |
|
|
| T |
24893932 |
ggaatggtaacaaaatgccccctttcaagcccacacatggtctcagacaaggtgaccc |
24893875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 582
Target Start/End: Complemental strand, 18092308 - 18092229
Alignment:
| Q |
503 |
ttcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccattcaactctc |
582 |
Q |
| |
|
||||||||||| ||||| ||||| || ||| ||| |||||| ||| ||| |||||| |||||||||||||| || ||||| |
|
|
| T |
18092308 |
ttcatcctttgcatggagaagctatcgatttccaccaacaatgttattcatcaaggtaattgggaccccatccatctctc |
18092229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 27852777 - 27852743
Alignment:
| Q |
594 |
ctcgattgtctcaccttctttttgctgatgatgtc |
628 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27852777 |
ctcgattgtctcaccttctttttgctgataatgtc |
27852743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 460
Target Start/End: Complemental strand, 11296898 - 11296866
Alignment:
| Q |
428 |
tggaacggaaacaaaatgccttctttcaagcct |
460 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
11296898 |
tggaacggaaacaaaatgccttccttcaagcct |
11296866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 194 - 634
Target Start/End: Complemental strand, 24133571 - 24133133
Alignment:
| Q |
194 |
ttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttca |
293 |
Q |
| |
|
||||| || ||||||| |||| |||||||| | |||||| | |||||| ||||||| |||||||||||||| |||||||||| |||||| | |||| |
|
|
| T |
24133571 |
ttcctgccaggtagaggtacttctgataatgttgttgttttgcaggaaataattcatttcatgagaagatcaaaaaagaaaaaggattttgctactttca |
24133472 |
T |
|
| Q |
294 |
agcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcat |
393 |
Q |
| |
|
| |||||||||||||| | |||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||| ||||| || | ||| | ||||| |
|
|
| T |
24133471 |
aacttgatcttgaaaaagcgtttgataatgttaactgggctttccttaaatcttgccttcacgactttggcttcccagacatcaccattaagcttatcat |
24133372 |
T |
|
| Q |
394 |
gcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatct |
493 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| |||| | | ||| | |||||| ||| | ||||||| ||| || |||| ||||||||| |
|
|
| T |
24133371 |
gcattgtgttacatcatcttcgctctctattctttggaacgggaacatatttcctcccttcaagtctt-taatggtcttagacaatggga-cctttatct |
24133274 |
T |
|
| Q |
494 |
cattacttattcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggaccccattcaactctccaacaatgggt |
593 |
Q |
| |
|
| ||| |||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||| ||||| ||||| ||| |
|
|
| T |
24133273 |
ccttatttattcattatttgcatggaaaagctcttcattgccatcaacaaaattgttcttcaaggtgattggaaccccattcagctctctaacaacgggc |
24133174 |
T |
|
| Q |
594 |
ctcgattgtctcaccttctttttgctgatgatgtccatctc |
634 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
24133173 |
ctcaattgtctcatcttctctttgctgatgacgtccttctc |
24133133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 164 - 543
Target Start/End: Original strand, 14291523 - 14291902
Alignment:
| Q |
164 |
gatactattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagat |
263 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| || ||||||| |||| ||||||||| | |||||| | |||||| |||| |||||| |||| |
|
|
| T |
14291523 |
gatactatcattggcccctaccagagcagtttcctgccaggtagaggtacttctgataatgctgttgttttgcaggaaatcattcaccatatgaggagat |
14291622 |
T |
|
| Q |
264 |
caaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttgg |
363 |
Q |
| |
|
|||||||||||||||| | ||| || |||||||| |||| || | ||||||||||| | |||| || ||| |||| ||||||||||| ||||| |
|
|
| T |
14291623 |
caaagaagaaaaaggggcaggtggcatttaagcttgactttgagaaagcctttgataatgtaagctggaccttccttcaatcatgccttcaagattttgg |
14291722 |
T |
|
| Q |
364 |
cttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttct |
463 |
Q |
| |
|
||| || || ||||||| ||| | |||||||||||||| ||||| || | |||||||||||||||||| || ||||| |||| | |||| |||||||| |
|
|
| T |
14291723 |
ctttccagatattacaattaagcttatcatgcattgtgtcacctcttccactctctctattctttggaatgggaacaagatgcatccttttaagccttcc |
14291822 |
T |
|
| Q |
464 |
catggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaa |
543 |
Q |
| |
|
||||| || ||| |||| || ||| || | |||| | |||||| | ||||||||||| || |||||| |||||||||| |
|
|
| T |
14291823 |
catggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatggaaaaactttccatttccatcaacaa |
14291902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 97 - 462
Target Start/End: Original strand, 33803700 - 33804065
Alignment:
| Q |
97 |
cagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaacagtttc |
196 |
Q |
| |
|
|||||||||||| || | || |||||||| |||||||| |||||| | || || | |||||| | ||| |||||| ||||| ||||||| ||| || |
|
|
| T |
33803700 |
cagtttatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatattataggcccttaccaaagcagcttt |
33803799 |
T |
|
| Q |
197 |
ctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagc |
296 |
Q |
| |
|
|| |||||||| | |||| ||||||| | |||||| | ||||||| |||||| ||||||||||| ||||||||||| || |||| ||| || |||| |
|
|
| T |
33803800 |
ctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatgagaagatctaagaagaaaaaaggatttgtggcgtttaagc |
33803899 |
T |
|
| Q |
297 |
ttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgca |
396 |
Q |
| |
|
|||| ||||| || | |||||||||||||| |||||||||||||| | ||| | || || ||||| ||||| ||||| || | |||| |||||||||| |
|
|
| T |
33803900 |
ttgaccttgagaaagcctttgataatgttaattgggattttcttaatttttgcttgcaggattttggtttcccagacatcaccatcaagctcatcatgca |
33803999 |
T |
|
| Q |
397 |
ttgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttc |
462 |
Q |
| |
|
||||||| |||| || | |||||| || ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
33804000 |
ttgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc |
33804065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 164 - 543
Target Start/End: Original strand, 14307572 - 14307951
Alignment:
| Q |
164 |
gatactattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagat |
263 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| || || ||||| |||| ||||||||| | |||||| | |||||| |||| |||||| |||| |
|
|
| T |
14307572 |
gatactatcattggcccctacctgagcagttttctgccaagtagatgtacttctgataatgctgttgttttacaggaaatcattcaccatatgaggagat |
14307671 |
T |
|
| Q |
264 |
caaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttgg |
363 |
Q |
| |
|
|||||||||||||||| | ||| || |||||||| ||||| || | ||||||||||| | |||| || ||| |||| ||||||||||| ||||| |
|
|
| T |
14307672 |
caaagaagaaaaaggggcaggtggcatttaagcttgaccttgagaaagcctttgataatgtaagctggaccttccttcaatcatgccttcaagattttgg |
14307771 |
T |
|
| Q |
364 |
cttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttct |
463 |
Q |
| |
|
||| || || ||||||| ||| | |||||||||||||| ||||| || | |||||||||||||||||| || ||||| |||| | |||| |||||||| |
|
|
| T |
14307772 |
ctttccagatattacaattaagcttatcatgcattgtgtcacctcttccactctctctattctttggaatgggaacaagatgcatccttttaagccttcc |
14307871 |
T |
|
| Q |
464 |
catggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaa |
543 |
Q |
| |
|
||||| || ||| |||| || ||| || | |||| | |||||| ||||||||||||| || |||||| |||||||||| |
|
|
| T |
14307872 |
catggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatggaaaaactttccatttccatcaacaa |
14307951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 378
Target Start/End: Complemental strand, 7588047 - 7587773
Alignment:
| Q |
104 |
tgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctg |
203 |
Q |
| |
|
||||||||||| || ||| ||||||| ||||||||||| |||| || | || ||| | || |||||||||||||||||||| ||||| |||||| |
|
|
| T |
7588047 |
tgcaacattgtgtacaaactcatcaccaaagtcttggttcaccgtctcagaccgattcttaatgttattattggcccctaccaaagtagttttctacctc |
7587948 |
T |
|
| Q |
204 |
gtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatct |
303 |
Q |
| |
|
|||| | || ||| ||| | |||||| | |||||||||||| || ||||||||||| || ||||| || || |||| |||||| || || ||||| |
|
|
| T |
7587947 |
gtaggggaacaactgacaattcaattgttttgcaggaaattgttcacttcatgagaagatccaaaaagaagaaagggtttgtggcctttaaactggatct |
7587848 |
T |
|
| Q |
304 |
tgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattac |
378 |
Q |
| |
|
|||||||| ||||||||| | || ||||| ||||||||| || || | |||||||||||||| |||||||| |
|
|
| T |
7587847 |
tgaaaaggcatttgataatataaattgggagtttcttaaaaattgtctaaatgactttggcttcccagacattac |
7587773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 540
Target Start/End: Complemental strand, 46784615 - 46784457
Alignment:
| Q |
382 |
caagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggg |
481 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| | |||| | |||||||| ||||| ||| |||| ||||||| ||| ||||||| || ||| |||| |
|
|
| T |
46784615 |
caagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggt |
46784516 |
T |
|
| Q |
482 |
gaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaa |
540 |
Q |
| |
|
|| ||| |||||| ||| | ||||||||||| ||| |||| || || |||||||||| |
|
|
| T |
46784515 |
gatcctctatctccctacctcttcatcctttgcatgaaaaaactttctcttgccatcaa |
46784457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 86 - 471
Target Start/End: Complemental strand, 53608736 - 53608351
Alignment:
| Q |
86 |
ttcaggcccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctacc |
185 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| || |||||||| ||||| | || ||| | ||||| | ||| |||||||||||| | || |
|
|
| T |
53608736 |
ttcaggccaatcagtttgtgcaacattgtctataaaattattactaaagttttggttcagcgtcttaggcctatccttaataatattattggcccttgcc |
53608637 |
T |
|
| Q |
186 |
aaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgc |
285 |
Q |
| |
|
||| ||| || || |||||||| | |||| |||||| | |||||| | ||||||| |||||| ||||| |||||||||||||||||| || | || |
|
|
| T |
53608636 |
aaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcattatatgaaaagatcaaagaagaaaaaaggctatgt |
53608537 |
T |
|
| Q |
286 |
ggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaag |
385 |
Q |
| |
|
||| |||||||| |||||||| || | ||||||||||| || |||||||||||||| | ||||| || || ||||| ||||| ||||| || | |||| |
|
|
| T |
53608536 |
ggctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaag |
53608437 |
T |
|
| Q |
386 |
ttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtct |
471 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
53608436 |
ctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtct |
53608351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 89 - 471
Target Start/End: Complemental strand, 17718791 - 17718409
Alignment:
| Q |
89 |
aggcccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaa |
188 |
Q |
| |
|
||||| || ||||| || |||||||| || |||||||| |||||||||||||| | || || | ||||| | ||| |||||||||||| ||||||| |
|
|
| T |
17718791 |
aggccaattagtttgtgtaacattgtctacaaaatcattactaaagtcttggttcagcggctcagacctatccttaataatattattggcccttaccaaa |
17718692 |
T |
|
| Q |
189 |
acagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggc |
288 |
Q |
| |
|
||| || || |||||||| | |||| |||||| | |||||| | |||||| |||||| ||||||||||| ||||||||||| |||| || ||| |
|
|
| T |
17718691 |
gcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaagaaaaaaggttatgtggc |
17718592 |
T |
|
| Q |
289 |
cttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttc |
388 |
Q |
| |
|
|||||||| || ||||| || | ||||||||||| || |||||||||||||| || || || || || ||||| ||||| ||| | || | |||| || |
|
|
| T |
17718591 |
tttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagctc |
17718492 |
T |
|
| Q |
389 |
atcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtct |
471 |
Q |
| |
|
||||||||||||||| |||| || | |||||||| | ||||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
17718491 |
atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggtct |
17718409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 89 - 471
Target Start/End: Complemental strand, 19020020 - 19019638
Alignment:
| Q |
89 |
aggcccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaa |
188 |
Q |
| |
|
||||| || ||||| || |||||||| || |||||||| |||||||||||||| | || || | ||||| | ||| |||||||||||| ||||||| |
|
|
| T |
19020020 |
aggccaattagtttgtgtaacattgtctacaaaatcattactaaagtcttggttcagcggctcagacctatccttaataatattattggcccttaccaaa |
19019921 |
T |
|
| Q |
189 |
acagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggc |
288 |
Q |
| |
|
||| || || |||||||| | |||| |||||| | |||||| | |||||| |||||| ||||||||||| ||||||||||| |||| || ||| |
|
|
| T |
19019920 |
gcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaagaaaaaaggttatgtggc |
19019821 |
T |
|
| Q |
289 |
cttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttc |
388 |
Q |
| |
|
|||||||| || ||||| || | ||||||||||| || |||||||||||||| || || || || || ||||| ||||| ||| | || | |||| || |
|
|
| T |
19019820 |
tttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagctc |
19019721 |
T |
|
| Q |
389 |
atcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtct |
471 |
Q |
| |
|
||||||||||||||| |||| || | |||||||| | ||||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
19019720 |
atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggtct |
19019638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 570
Target Start/End: Complemental strand, 38647535 - 38647134
Alignment:
| Q |
169 |
tattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaag |
268 |
Q |
| |
|
||||||||||| ||| |||| || ||| || |||||||||| || | ||||||| | |||||| | ||||||||| ||||| ||||||| ||| || |
|
|
| T |
38647535 |
tattattggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaa |
38647436 |
T |
|
| Q |
269 |
aagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttcc |
368 |
Q |
| |
|
|| |||||||||| || | ||||| ||||| || ||||| | ||||||||||| |||||||| || ||||| || ||||| || || ||||| || | |
|
|
| T |
38647435 |
aataaaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttc |
38647336 |
T |
|
| Q |
369 |
ctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatgg |
468 |
Q |
| |
|
| ||||| || | |||| ||||||||||||||||| | || || | ||||||||||||||||||| || |||||||| |||| |||||||| || || |
|
|
| T |
38647335 |
cagacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacgg |
38647236 |
T |
|
| Q |
469 |
tctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggac |
568 |
Q |
| |
|
||| ||| |||| || || | |||| ||| | ||||| | || |||||||||||||| ||||| || || || | || |||||||| ||||||||| |
|
|
| T |
38647235 |
tctcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagctctctattgctattaataatgcagtgcttcaaggaaattgggac |
38647136 |
T |
|
| Q |
569 |
cc |
570 |
Q |
| |
|
|| |
|
|
| T |
38647135 |
cc |
38647134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 15473739 - 15473635
Alignment:
| Q |
229 |
tgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaac |
328 |
Q |
| |
|
|||||| | ||||||||| |||||||||| |||||| || | ||||||||||| || ||| |||| |||||| || ||||| | ||||||||||||||| |
|
|
| T |
15473739 |
tgttttgcaggaaattgtacattttatgaaaagatccaaaaggaaaaagggttatgtggctttcaggcttgacctggaaaaagcgtttgataatgttaat |
15473640 |
T |
|
| Q |
329 |
tggga |
333 |
Q |
| |
|
||||| |
|
|
| T |
15473639 |
tggga |
15473635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 402
Target Start/End: Complemental strand, 55025217 - 55024919
Alignment:
| Q |
104 |
tgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctg |
203 |
Q |
| |
|
||||||||||| || ||| ||||||| ||||||||||| ||||||| | || ||| | || |||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
55025217 |
tgcaacattgtgtacaaactcatcaccaaagtcttggttcaccgcctccagcccattctaaatgctattattggcccctatcaaagtagttttctacctg |
55025118 |
T |
|
| Q |
204 |
gtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatct |
303 |
Q |
| |
|
|||| | ||| ||| ||| | |||||| | |||| | ||||||| ||||| |||||||| ||||| || || ||| |||||| ||| | ||||| |
|
|
| T |
55025117 |
gtaggggcaccactgacaattcaattgttttgcaggaagtagttcattacatgaggagatcaaaaaagaagaaagggcttgtggcctttaagttggatct |
55025018 |
T |
|
| Q |
304 |
tgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgt |
402 |
Q |
| |
|
||||| | || |||||||| || ||| | |||||| || ||| || || || ||||| |||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
55025017 |
agaaaaagctttcgataatgtcaaatggaaatttcttcaaaactgtctacatgattttggtttccctgacattacaatcaaactcattatgcattgtgt |
55024919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 542
Target Start/End: Original strand, 13029842 - 13030372
Alignment:
| Q |
13 |
tttttacccttcaatctttgatactctaatttctctcatcccaaaaattgctcctccaaattctttcaaaattttcaggcccatcagtttatgcaacatt |
112 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||| ||| | | ||| | ||| || | ||||| ||| ||| ||| |
|
|
| T |
13029842 |
ttttgaccctgcaatctttgatactctgatttagctcatccctaaaattgaacctcccaatacatacaagaattttagacaaatcagcctatacaatatt |
13029941 |
T |
|
| Q |
113 |
gtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctggtagagaca |
212 |
Q |
| |
|
||||| | | ||||| |||||||||||| | ||||||| || |||| | ||| ||||||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
13029942 |
gtttacatgactatcacaaaagtcttggtccatcgccttcctcttattcttgatgctattattggcccctaccaaagtagtttcctgcctggtagaggta |
13030041 |
T |
|
| Q |
213 |
cttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaagga |
312 |
Q |
| |
|
||| | | |||| | |||| | |||||| |||||||||||||||||| ||||| || ||||| |||||| | || ||||||||||||||||| |
|
|
| T |
13030042 |
cttctaacaatgtcattattttgcaggaaatcattcattttatgagaagatataagaaaaagaaggggtttgcgacttttaagcttgatcttgaaaaaac |
13030141 |
T |
|
| Q |
313 |
gtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctca |
412 |
Q |
| |
|
||||||||||| || ||| ||||||| || | ||||| || || ||||||||||| || || || ||||| | ||||||||||||||| ||||| ||| |
|
|
| T |
13030142 |
ttttgataatgtcaattggttttttcttcaaacttgcctccaggattttggcttcccagaaatcactaccaaatccatcatgcattgtgtcacctcttca |
13030241 |
T |
|
| Q |
413 |
attctctctattctttggaacgg-aaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctt |
511 |
Q |
| |
|
| ||| ||||| |||||||| || ||| ||||||||| |||||||| | |||| |||||| | |||||||| |||||| |||| ||||||||||| |
|
|
| T |
13030242 |
actctttctatcctttggaatggtaaaaaaaatgcctctgttcaagccgacacatgacctaagacagggggaccccctatctccttacatattcatcctt |
13030341 |
T |
|
| Q |
512 |
tgtatggaaaagctctccattgccatcaaca |
542 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||| |
|
|
| T |
13030342 |
tgcatggaaaatctctctattgccatcaaca |
13030372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 543
Target Start/End: Complemental strand, 26708990 - 26708685
Alignment:
| Q |
238 |
ggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggatttt |
337 |
Q |
| |
|
|||||||||||| |||||||||| ||| || ||||| || || |||| |||||| || || || |||||||| | ||||||||||| | ||||| ||| |
|
|
| T |
26708990 |
ggaaattgttcactttatgagaaaatctaaaaagaagaaagggtttgtggcctttaaactggaccttgaaaatgcctttgataatgtccattgggagttt |
26708891 |
T |
|
| Q |
338 |
cttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaa |
437 |
Q |
| |
|
|||| | || || || || ||||||||||| || ||||| | |||| |||| ||||||||||| || || || | | |||| ||||| ||||| |||| |
|
|
| T |
26708890 |
cttagaaattgtctgcatgattttggcttcccagaaattaccagcaagctcattatgcattgtgtcacttcatctactttctcaattctatggaatggaa |
26708791 |
T |
|
| Q |
438 |
acaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccat |
537 |
Q |
| |
|
|||| | ||| || ||||| ||||||||||| | | || |||||| | |||| |||| | ||||| || ||||||||||||||||| || ||||| |
|
|
| T |
26708790 |
acaagcttcctcaatttaagccatctcatggtcttcgccagggtgaccctctctctccttaccttttcatactgtgtatggaaaagctctctatcgccat |
26708691 |
T |
|
| Q |
538 |
caacaa |
543 |
Q |
| |
|
||||| |
|
|
| T |
26708690 |
taacaa |
26708685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 169 - 342
Target Start/End: Original strand, 26587021 - 26587194
Alignment:
| Q |
169 |
tattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaag |
268 |
Q |
| |
|
||||||||| |||||||||| |||||| || || ||||| | ||||| ||| || | |||||| | |||||||| ||| |||||||| | ||| ||| |
|
|
| T |
26587021 |
tattattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaag |
26587120 |
T |
|
| Q |
269 |
aagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaa |
342 |
Q |
| |
|
| ||| || || | || || ||||||||||||||||| || | ||||| |||||||||||||| |||||||| |
|
|
| T |
26587121 |
aggaagaaaggctatgttgctttcaagcttgatcttgagaaagcatttgacaatgttaactgggagtttcttaa |
26587194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 537
Target Start/End: Original strand, 38348264 - 38348632
Alignment:
| Q |
169 |
tattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaag |
268 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| |||||||| | |||| ||||||| | | |||| | ||||||||| ||| ||||||| |||||| |
|
|
| T |
38348264 |
tattattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaattgtccatcacatgagaaaatcaaaa |
38348363 |
T |
|
| Q |
269 |
aagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttcc |
368 |
Q |
| |
|
|||||||| |||| || || ||||| | ||||| ||||| | ||||||||||| |||||||| ||||| | ||| | |||| || || || | |
|
|
| T |
38348364 |
aagaaaaaaggttgtgttgctttcaaaatggatctagaaaaagcttttgataatgtcaactgggaatttctccatcattgcttgaaagatttcggttttc |
38348463 |
T |
|
| Q |
369 |
ctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatgg |
468 |
Q |
| |
|
| ||||| || | |||| |||||||||||||||||||||| | | ||||||| |||||||| || |||| | || || ||||||||||||| || | |
|
|
| T |
38348464 |
cagacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttcccacga |
38348563 |
T |
|
| Q |
469 |
tctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccat |
537 |
Q |
| |
|
||| | |||| |||| |||||| || ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
38348564 |
tcttcgtcaaggtgacctgctatctctatatttatttattctttgtatggaaaagctctcggttgccat |
38348632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 169 - 543
Target Start/End: Original strand, 177293 - 177667
Alignment:
| Q |
169 |
tattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaag |
268 |
Q |
| |
|
||||||||| |||||||||| ||||||||| | ||||| | ||||| ||| || | |||||| | ||||||||||||||||||| | |||||||| |
|
|
| T |
177293 |
tattattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaa |
177392 |
T |
|
| Q |
269 |
aagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttcc |
368 |
Q |
| |
|
| |||||| |||| | || ||||| ||||||||||| || | ||||| ||||| || ||||| ||||||| ||| || || ||||| ||||| |||| |
|
|
| T |
177393 |
aggaaaaaaggttacgttgctttcaaacttgatcttgagaaagcttttgacaatgtgaattgggagtttcttagatcgtgtctccaagattttggtttcc |
177492 |
T |
|
| Q |
369 |
ctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatgg |
468 |
Q |
| |
|
| || ||||| ||| |||||||||||||||| || || |||| ||||| |||||||||| ||||||||| |||| || |||||||| ||||||| |
|
|
| T |
177493 |
cggatgatacaatcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatgg |
177592 |
T |
|
| Q |
469 |
tctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaa |
543 |
Q |
| |
|
||||||| |||| |||||||| |||| |||| |||||||| | || ||||||||||||||| ||||||| ||||| |
|
|
| T |
177593 |
tctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagctctcccttgccattaacaa |
177667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 333
Target Start/End: Complemental strand, 42403689 - 42403406
Alignment:
| Q |
50 |
atcccaaaaattgctcctccaaattctttcaaaattttcaggcccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgcc |
149 |
Q |
| |
|
||||||||||||| |||||||| | |||||| ||||||||| ||||| | ||||| || ||||| |||||||||||||| || || || | |||| |
|
|
| T |
42403689 |
atcccaaaaattgactctccaaatacattcaaagatttcaggccgatcagcctttgcaatatagtttacaaaatcatcactaaggttttagtgcaacgcc |
42403590 |
T |
|
| Q |
150 |
ttcgtcctattttggatactattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttca |
249 |
Q |
| |
|
|| | ||| | | ||| |||||||||||||| ||||| ||||| ||||||||||| | |||| ||||||| | |||||| | ||||||| | || |
|
|
| T |
42403589 |
ttagacctctccttaataatattattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaattataca |
42403490 |
T |
|
| Q |
250 |
ttttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactggga |
333 |
Q |
| |
|
|||||||| |||||| || | ||||||||||| || ||||||||||||||| || ||||| | |||||||||||| |||||||| |
|
|
| T |
42403489 |
ttttatgaaaagatccaaaaggaaaaagggttatgtggccttcaagcttgacctggaaaaagcgtttgataatgtcaactggga |
42403406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 170 - 576
Target Start/End: Original strand, 572987 - 573393
Alignment:
| Q |
170 |
attattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaaga |
269 |
Q |
| |
|
||||| ||||| ||||||| |||||| || | |||||| || |||| |||||| | |||||| | ||||||||||||||| ||||||| |||||| | |
|
|
| T |
572987 |
attatcggcccttaccaaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcatttcatgagaaaatcaaaaa |
573086 |
T |
|
| Q |
270 |
agaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccc |
369 |
Q |
| |
|
|||| ||||| | || || |||||||| || | ||||| | |||| |||||| | |||||||| ||||| ||||||||||| || ||||| || || |
|
|
| T |
573087 |
agaagaaggggtatgttgctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttcc |
573186 |
T |
|
| Q |
370 |
tgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggt |
469 |
Q |
| |
|
||||| || | ||| | |||||||||| ||| || || ||| |||||||| | ||||| || |||||||||| | |||| || ||||| ||||| |
|
|
| T |
573187 |
agacatcaccatcaaacttatcatgcattatgtcacatcaccaacgttctctattttatggaatggtaacaaaatgcatccttttaaaccttcccatggc |
573286 |
T |
|
| Q |
470 |
ctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggacc |
569 |
Q |
| |
|
|| ||| |||| || || | |||| |||| ||||||||||||| ||||| |||||||| |||| || || || || || |||||||| |||||||| | |
|
|
| T |
573287 |
ctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagctctctgttgcaattaataatgtagtgcttcaaggaaattgggatc |
573386 |
T |
|
| Q |
570 |
ccattca |
576 |
Q |
| |
|
||||||| |
|
|
| T |
573387 |
ccattca |
573393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 16322312 - 16322410
Alignment:
| Q |
238 |
ggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattt |
336 |
Q |
| |
|
||||||| | |||||||||| | |||| || | ||||||||| | | ||| ||||||||||| || ||||| | ||||||||||||||| |||||||| |
|
|
| T |
16322312 |
ggaaattttacattttatgaaacgatccaaaaggaaaaagggctacgtggctttcaagcttgacctggaaaaagcgtttgataatgttaattgggattt |
16322410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 314 - 468
Target Start/End: Original strand, 26791260 - 26791414
Alignment:
| Q |
314 |
tttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaa |
413 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||||| || ||||||||||| || | || | |||| ||||||||||||| ||||| || || | |
|
|
| T |
26791260 |
tttgataatgttaactgggactttctccgatcttgcctttgtgattttggcttcccggataccaccatcaagctcatcatgcattgcgttacttcatcca |
26791359 |
T |
|
| Q |
414 |
ttctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatgg |
468 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| ||||| ||||| ||||||| |
|
|
| T |
26791360 |
gcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatgg |
26791414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 329 - 525
Target Start/End: Original strand, 7817089 - 7817285
Alignment:
| Q |
329 |
tgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattcttt |
428 |
Q |
| |
|
|||||||| |||| || ||||| || || ||||| ||||||||||| |||| |||| |||||||||||||||| | ||||| | ||||||| | | |
|
|
| T |
7817089 |
tgggatttccttagttcgtgcctccatgattttggtttccctgacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttat |
7817188 |
T |
|
| Q |
429 |
ggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagct |
525 |
Q |
| |
|
|||| || |||||| | ||||||||||||||| |||||||||| ||| | || ||||||||||||| |||| | ||||| ||||| ||||||||||| |
|
|
| T |
7817189 |
ggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct |
7817285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 342
Target Start/End: Original strand, 23944729 - 23944985
Alignment:
| Q |
86 |
ttcaggcccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctacc |
185 |
Q |
| |
|
||||||||||||||||||||||| || | || |||||||| |||||||| |||||| | || || | |||||| | ||| |||||| ||||| |||| |
|
|
| T |
23944729 |
ttcaggcccatcagtttatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatattataggcccttacc |
23944828 |
T |
|
| Q |
186 |
aaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgc |
285 |
Q |
| |
|
||| ||| || || |||||||| | |||| ||||||| | |||||| | ||||||| |||||| ||||||||||| |||||||||| | |||| |
|
|
| T |
23944829 |
aaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatgagaagatctaagaagaaaacaagatttgt |
23944928 |
T |
|
| Q |
286 |
ggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaa |
342 |
Q |
| |
|
||| || |||||||| ||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
23944929 |
ggcgtttaagcttgaccttgagaaatcctttgataacgttaattgggattttcttaa |
23944985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 480
Target Start/End: Original strand, 31814624 - 31814750
Alignment:
| Q |
353 |
caagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctt |
452 |
Q |
| |
|
||||||||||||||||| |||| || | |||| ||||||||||||||||| |||| || | | | ||||| |||||||| || ||||||||||| | | |
|
|
| T |
31814624 |
caagactttggcttcccatacatcactatcaagctcatcatgcattgtgtttcctcatctactttttctatcctttggaatggtaacaaaatgcc-ccat |
31814722 |
T |
|
| Q |
453 |
tcaagccttctcatggtctaagataagg |
480 |
Q |
| |
|
| ||||| ||||||||||| ||| |||| |
|
|
| T |
31814723 |
ttaagccctctcatggtctcagacaagg |
31814750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 569
Target Start/End: Complemental strand, 5864764 - 5864709
Alignment:
| Q |
514 |
tatggaaaagctctccattgccatcaacaaggttgttcttcaaggcaattgggacc |
569 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||| | | |||||||| |
|
|
| T |
5864764 |
tatggaaaagctctcccttgccatcaacaatgtcgttcttcaacggacttgggacc |
5864709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 92 - 528
Target Start/End: Original strand, 1524687 - 1525123
Alignment:
| Q |
92 |
cccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggtcaaccgccttcgtcctattttggatactattattggcccctaccaaaaca |
191 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||| ||||| ||||| || | || | || ||| | ||| ||||||||||||||| |||| | |
|
|
| T |
1524687 |
cccatcagtatgtgcaacattgtttataaaattatcaccaaagttttggttaatagactgagaccgattctaaataatattattggcccctatcaaagta |
1524786 |
T |
|
| Q |
192 |
gtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggcctt |
291 |
Q |
| |
|
|||| || |||||||| | |||| ||||||| | |||||| | ||||||||| || || ||||||| |||||| |||||||| |||| || || || |
|
|
| T |
1524787 |
gttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatgagaaaatcaaaaaagaaaaaaggttgtgtagcttt |
1524886 |
T |
|
| Q |
292 |
caagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatc |
391 |
Q |
| |
|
|| || ||||| || || | |||||||||||||||||||||| ||| | ||| | ||||||| || ||||| || || || | ||| ||||| |
|
|
| T |
1524887 |
taaactagatctagagaaagcttttgataatgttaactgggattatctccatcattgcttgaaagacttcggattcccggatatcaccatcaaactcatc |
1524986 |
T |
|
| Q |
392 |
atgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttat |
491 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| || |||||| | ||| ||||||||||||| || ||||| | |||| ||||| ||| |
|
|
| T |
1524987 |
atgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttcggcaaggtgacccgctat |
1525086 |
T |
|
| Q |
492 |
ctcattacttattcatcctttgtatggaaaagctctc |
528 |
Q |
| |
|
||| |||||||| || || ||||||||||||||||| |
|
|
| T |
1525087 |
ctccctacttatttattctctgtatggaaaagctctc |
1525123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 229 - 447
Target Start/End: Original strand, 50451752 - 50451970
Alignment:
| Q |
229 |
tgtttttccggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaac |
328 |
Q |
| |
|
|||||| | ||||||| ||||||||||||| | || ||||||||||| |||| || || |||||||| ||| | ||||| | ||||||||||| || |
|
|
| T |
50451752 |
tgttttgcaggaaattattcattttatgaggaagtctaagaagaaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaa |
50451851 |
T |
|
| Q |
329 |
tgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattcttt |
428 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||| || || ||||| || | ||| | |||||||||||||| |||||||| | | ||||||| | | |
|
|
| T |
50451852 |
tgggattttcttaattcttgccttcatgagtttggttttccggacatcaccatcaaacttatcatgcattgtgtcacctcctccactttctctatcttat |
50451951 |
T |
|
| Q |
429 |
ggaacggaaacaaaatgcc |
447 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
50451952 |
ggaatggtaacaaaatgcc |
50451970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 395
Target Start/End: Complemental strand, 31325305 - 31325079
Alignment:
| Q |
169 |
tattattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaag |
268 |
Q |
| |
|
||||||||||||||||| || |||||| || |||||||| | |||| |||||| | |||||| | ||||||||| || || ||||||||||| ||| |
|
|
| T |
31325305 |
tattattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaag |
31325206 |
T |
|
| Q |
269 |
aagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttcc |
368 |
Q |
| |
|
||||| ||||||| | || ||||| ||||| || || || | ||||||||||| || |||||||| ||||| || ||||| || || || || || | |
|
|
| T |
31325205 |
aagaagaagggttacgtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttc |
31325106 |
T |
|
| Q |
369 |
ctgacattacaaccaagttcatcatgc |
395 |
Q |
| |
|
| ||||| |||| |||| ||||||||| |
|
|
| T |
31325105 |
cagacatcacaatcaagctcatcatgc |
31325079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 543
Target Start/End: Complemental strand, 10103813 - 10103659
Alignment:
| Q |
389 |
atcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctt |
488 |
Q |
| |
|
||||||||||| || || | |||| | |||||||| | |||||||| ||||||||||| | ||||||||| | ||||||| ||| |||| | || |
|
|
| T |
10103813 |
atcatgcattgcgtcactttatcaactttctctattttatggaacggtaacaaaatgccctagttcaagcctacatatggtctcagacaaggtgttccgc |
10103714 |
T |
|
| Q |
489 |
tatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaa |
543 |
Q |
| |
|
| |||| |||| ||||||||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
10103713 |
tctctccttacctattcatcctttgcatggagaagctctctattgctatcaacaa |
10103659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 1524216 - 1524265
Alignment:
| Q |
92 |
cccatcagtttatgcaacattgtttataaaatcatcactaaagtcttggt |
141 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
1524216 |
cccatcagtctgtgcaacattgtttataaaattatcaccaaagttttggt |
1524265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 43298157 - 43298286
Alignment:
| Q |
171 |
ttattggcccctaccaaaacagtttcctacctggtagagacacttttgataatgcggctgtttttccggaaattgttcattttatgagaagatcaaagaa |
270 |
Q |
| |
|
|||||||||| ||||||| |||||| || ||| |||| | |||| |||||| | |||||| | |||||| |||||||||||||||||||| || || |
|
|
| T |
43298157 |
ttattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaaaaa |
43298256 |
T |
|
| Q |
271 |
gaaaaagggttttgcggccttcaagcttga |
300 |
Q |
| |
|
||| ||||| | || |||||||| ||||| |
|
|
| T |
43298257 |
gaagaagggatatgtagccttcaaacttga |
43298286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 568
Target Start/End: Original strand, 27153222 - 27153437
Alignment:
| Q |
353 |
caagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctt |
452 |
Q |
| |
|
|||||||||||||| | || | ||||| |||| | || ||||||||||| |||||||| | ||| ||||| || ||||| || || || || ||| ||| |
|
|
| T |
27153222 |
caagactttggctttctagatactacaatcaagctaattatgcattgtgtcacctcctcgactctttctatcctatggaatgggaataagattcctcctt |
27153321 |
T |
|
| Q |
453 |
tcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctccattgccatcaacaaggttgttct |
552 |
Q |
| |
|
||||||||| |||||| || | |||| |||| | | |||| || ||||| |||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
27153322 |
tcaagccttatcatggccttcggcaaggagaccatctctctccctatttatttatcctttgtatggaaaagctctccattgccatcaacaatgatgttaa |
27153421 |
T |
|
| Q |
553 |
tcaaggcaattgggac |
568 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
27153422 |
tcaaggtacttgggac |
27153437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 525
Target Start/End: Complemental strand, 27781917 - 27781630
Alignment:
| Q |
238 |
ggaaattgttcattttatgagaagatcaaagaagaaaaagggttttgcggccttcaagcttgatcttgaaaaggagtttgataatgttaactgggatttt |
337 |
Q |
| |
|
||||||||| || |||||| | ||||| |||||||| || |||| || || ||||| ||||| || || || | ||||||||||| || |||||||| |
|
|
| T |
27781917 |
ggaaattgtacactttatgcggagatctaagaagaagaaaggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggattt- |
27781819 |
T |
|
| Q |
338 |
cttaaatcct-gccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattctttggaacgga |
436 |
Q |
| |
|
||||| | || ||||||| |||||||| ||||| || ||||| | ||| |||||||||| ||||| ||||| || | | |||| ||||| |||||||| |
|
|
| T |
27781818 |
cttaagtgcttgccttcatgactttggtttcccagatattaccataaagctcatcatgcactgtgtcacctcatccactttctccattctatggaacggg |
27781719 |
T |
|
| Q |
437 |
aacaaaatgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagct |
525 |
Q |
| |
|
|||||||||||| | || ||||| ||||||| || ||| |||| |||||| | || | |||| | |||||||| || ||||| ||||| |
|
|
| T |
27781718 |
aacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccctctttcaccttacctcttcatcctctgcatggagaagct |
27781630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 486
Target Start/End: Complemental strand, 23208062 - 23207905
Alignment:
| Q |
329 |
tgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaattctctctattcttt |
428 |
Q |
| |
|
|||||||| ||||| || ||||| || || ||||| || || || ||||| | ||| ||||||||||||| || |||||||| | |||| ||| | | |
|
|
| T |
23208062 |
tgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaaactcatcatgcattgcgtcacctcctccacattctcaattttat |
23207963 |
T |
|
| Q |
429 |
ggaacggaaacaaaatgccttctttcaagccttctcatggtctaagataaggggaccc |
486 |
Q |
| |
|
||||||| ||||||||||| |||||||||| | |||||||| ||| |||| ||||| |
|
|
| T |
23207962 |
ggaacggtaacaaaatgccccctttcaagcccacacatggtcttagacaaggtgaccc |
23207905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 468
Target Start/End: Original strand, 8906 - 9060
Alignment:
| Q |
314 |
tttgataatgttaactgggattttcttaaatcctgccttcaagactttggcttccctgacattacaaccaagttcatcatgcattgtgttacctcctcaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| || ||||||||||| || | || | |||| ||||||||||||| |||||||| || | |
|
|
| T |
8906 |
tttgataatgttaactgggattttctccgatcttgcctttgtgattttggcttcccggataccaccatcaagctcatcatgcattgcgttacctcatcca |
9005 |
T |
|
| Q |
414 |
ttctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatgg |
468 |
Q |
| |
|
|||||||||||||||| || || | ||||| ||||| ||||||||||||| |
|
|
| T |
9006 |
gattctctattctttggaatggtaataggctgcctcctttcgagccttctcatgg |
9060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 528
Target Start/End: Original strand, 75976 - 76060
Alignment:
| Q |
444 |
tgccttctttcaagccttctcatggtctaagataaggggaccctttatctcattacttattcatcctttgtatggaaaagctctc |
528 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||| |||| |||| || || | ||| | ||||||||||| |||||||||||||| |
|
|
| T |
75976 |
tgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctctc |
76060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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