View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_33 (Length: 290)
Name: NF18651_low_33
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 48489761 - 48489971
Alignment:
| Q |
30 |
aacaatagagaacatttcctcacaaactcctccttccatgcaaacaattgacgtctccactcctacgcccctccatcgattccccaaccacgaccctcca |
129 |
Q |
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| T |
48489761 |
aacaacagagaacatttcctcacaaactcctccttccacgcaaacaatcgacgtctccactcctacgcccctccatcgattccccaaccacgaccctcca |
48489860 |
T |
|
| Q |
130 |
tccctcccaccgtgggatggtccaatgtaaatacaaaacccgaaatgctgatagctcccattttaaannnnnnnnaactttataaggaactactcaaatt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
48489861 |
cccctcccaccgtgggatggtccaatgtaaatacaaaacccgaaatgctgatagctcccattttaaaattttttaaactttacaaggaactactcaaatt |
48489960 |
T |
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| Q |
230 |
tcctcaacaag |
240 |
Q |
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||||||||||| |
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| T |
48489961 |
tcctcaacaag |
48489971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 3160214 - 3160296
Alignment:
| Q |
60 |
tccttccatgcaaacaattgacgtctccactcctacgcccctccatcgattccccaaccacgaccctccatccctcccaccgt |
142 |
Q |
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| T |
3160214 |
tcctcccacgcaaacaatcgtcgtctccactcccacacccctccatcgattccccaaccacaaccctccatccctcccaccgt |
3160296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 14206814 - 14206709
Alignment:
| Q |
36 |
agagaacatttcctcacaaactcctccttccatgcaaacaattgacgtctccactcctacgcccctccatcgattccccaaccacgaccctccatccctc |
135 |
Q |
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|||||||||| ||||||| |||||| || ||| |||||||| | |||||||||| | |||||||||| |||||||||||||||||||||||| ||| |
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| T |
14206814 |
agagaacattccctcacagactcctactcccacgcaaacaaacggagtctccactctcatgcccctccattaattccccaaccacgaccctccatctctc |
14206715 |
T |
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| Q |
136 |
ccaccg |
141 |
Q |
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|||||| |
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| T |
14206714 |
ccaccg |
14206709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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