View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18651_low_34 (Length: 287)
Name: NF18651_low_34
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_34 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 463630 - 463886
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
463630 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcgatgttgt |
463729 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
463730 |
tattggtttgaaaactc-taagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
463828 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
463829 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
463886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 35899290 - 35899034
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
35899290 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcgatgttgt |
35899191 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35899190 |
tattggtttgaaaactct-aagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
35899092 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
35899091 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
35899034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 34673667 - 34673784
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||| |||||| ||||||||||||||||| | |||||||| |
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|
| T |
34673667 |
tgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtagacgtcgatgttgt |
34673766 |
T |
|
| Q |
108 |
tattggtttgaaaactct |
125 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
34673767 |
tattggtttgaaaactct |
34673784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 31356830 - 31356574
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
31356830 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcgatgttgt |
31356731 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31356730 |
tattggtttgaaaactct-aagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
31356632 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31356631 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
31356574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 16994119 - 16993863
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
16994119 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcgatgttgt |
16994020 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16994019 |
tattggtttgaaaactc-taagacaaaaagagctgcgtaagggccacctatatgttaattatataaaaacagctgctcccgtataacaaaagaacgcata |
16993921 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
16993920 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
16993863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 15333325 - 15333407
Alignment:
| Q |
16 |
atgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcg--caaccattgatgattgtagac |
96 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||| | ||||||| ||| ||| | ||||||||||||||| |
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|
| T |
15333325 |
atgccaaaaggattgtagattattacaataagagaagcaatgatattttcgaattcggcgcccaatcgttgatgattgtagac |
15333407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 52053038 - 52053272
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
52053038 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtcgatgttgt |
52053137 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52053138 |
tattggtttgaaaactc-taagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
52053236 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagac |
243 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| |
|
|
| T |
52053237 |
ccccttcctcataattcacatagaaaaaacttagac |
52053272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 53572650 - 53572906
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
53572650 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtttatgttgt |
53572749 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53572750 |
tattggtttgaaaactct-aagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
53572848 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
53572849 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
53572906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 30197795 - 30198051
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30197795 |
tgagatggatgccaaaagggttgtagattattacaataaggtaagcaatgatatatctgaattcagcgcaaccattgatgattgtagacgtttatgttgt |
30197894 |
T |
|
| Q |
108 |
tattggtttgaaaactcttaagacaaaaagagctgcataagggccacctgtatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30197895 |
tattggtttgaaaactct-aagacaaaaagagctgcgtaagggccacctatatgttaattatacaaaaacagctgctcccgtataacaaaagaacgcata |
30197993 |
T |
|
| Q |
208 |
cctcttcctcataattcacatcgaaaaaacttagacnnnnnnntccagcaaggctgcc |
265 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
30197994 |
ccccttcctcataattcacatagaaaaaacttagacaaaaaactccagcaaggctgcc |
30198051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 11524263 - 11524146
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| |||||||| ||| |||||||||||||| ||| | ||||||||||||||| ||||| |||||| ||||||||||||||||| | |||||||| |
|
|
| T |
11524263 |
tgagatggatgccaaacgggctgtagattattacattaaaggaagcaatgatatatctgaatttggcgcaatcattgatgattgtagacgtcgatgttgt |
11524164 |
T |
|
| Q |
108 |
tattggtttgaaaactct |
125 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
11524163 |
tcttggtttgaaaactct |
11524146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 20463752 - 20463635
Alignment:
| Q |
8 |
tgagatgaatgccaaaagggttgtagattattacaataaggtaagcaatgatatatccgaattcagcgcaaccattgatgattgtagacttggatgttgt |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||| || ||| |||||| |||||||||| | | |||||| |
|
|
| T |
20463752 |
tgagatggatgccaaacgggttgtagattattacattaaaggaagcaatgatatatctgaatttggcacaatcattgaggattgtagacgtcggtgttgt |
20463653 |
T |
|
| Q |
108 |
tattggtttgaaaactct |
125 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
20463652 |
tcttggtttgaaaactct |
20463635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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