View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_38 (Length: 272)
Name: NF18651_low_38
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 11589880 - 11589619
Alignment:
| Q |
1 |
ataattactcttttctaatggaaaatgatatgtatcaatcaataacatatatataaagtaatgcttttatttcacgagccgttttcatatttattcgtaa |
100 |
Q |
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| T |
11589880 |
ataatttctcttttctaatggaaaatgatatgtatcaatcaataacatatatataaagtaatgtttttatttcacgagccgttttcatatttattcgtaa |
11589781 |
T |
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| Q |
101 |
tattttgttctatttttcaatatcgatttttacttggtataaaatgacaac-aaaccttacannnnnnnnnnnnnnnnnnnnnnnngctaaaccagaagc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
11589780 |
tattttgttctatttttcaatatcgatttttacttggtataaaatgacaacaaaaccttacatttttatttttttcaattttttttgctaaaccagaagc |
11589681 |
T |
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| Q |
200 |
ttggacaaacatcaaagggaagcaacgatatcacaactatgttagcactccaatgaaccccc |
261 |
Q |
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||||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
11589680 |
ttggataaacatcaaagggaagcaacgacatcacaactgtgttggcactccaatgaaccccc |
11589619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 11602425 - 11602211
Alignment:
| Q |
47 |
atatatataaagtaatgcttttatttcacgagccgttttcatatttattcgtaatattttgttctatttttcaatatcgatttttacttggtataaaatg |
146 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11602425 |
atatatataatgtaatgtttttatttcacgagccgttttcatatttattcgtaatattttgttctatttttcaatatcaatttttacttggtataaaatg |
11602326 |
T |
|
| Q |
147 |
acaacaaaccttacannnnnnnnnnnnnnnnnnnnnnnngctaaaccagaagcttggacaaacatcaaagggaagcaacgatatcacaactatgttagca |
246 |
Q |
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| T |
11602325 |
ataacaaaccttacatttttatttttttcaaatttttttgctaaaccagaagcttggataaacatcaaaaggaagcaacaacatcacaactatgttggca |
11602226 |
T |
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| Q |
247 |
ctccaatgaaccccc |
261 |
Q |
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| T |
11602225 |
cttcaatgaaccccc |
11602211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11602501 - 11602447
Alignment:
| Q |
1 |
ataattactcttttctaatggaaaatgatatgtatcaatcaataacatatatata |
55 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11602501 |
ataatttctcttttctaatggaaaatgatatgtatcaatcaataatatatatata |
11602447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 12085640 - 12085570
Alignment:
| Q |
187 |
ctaaaccagaagcttggacaaacatcaaagggaagcaacgatatcacaactatgttagcactccaatgaacc |
258 |
Q |
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||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||| ||||||||||| |
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| T |
12085640 |
ctaaaccaggagcttggacaagcatcaaagcgaagcaacgacatcccaactatgttggca-tccaatgaacc |
12085570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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