View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_4 (Length: 574)
Name: NF18651_low_4
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 51901709 - 51901436
Alignment:
| Q |
10 |
aagaatattttgcatttctgctgtagattcattattatcatattgaccaaatagaataactactaaagaaacaatagaattaaatggcattcattcat-- |
107 |
Q |
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| T |
51901709 |
aagactattttgcatttctgctgtagattcattattatcatattgaccaaatagaataactactaaagaaacaatagaattaa-tggcattcattcattc |
51901611 |
T |
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| Q |
108 |
-------gtgagaatctcaaaacactgcttgaaccgaggacattcttgtttaacataacacaaataactgaataagatagcaaaacataaatatcattct |
200 |
Q |
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| T |
51901610 |
gaagaatgtgagaatctcaaaacactgcttgaaccgaggacattcttgtttaacataacacaaataactgaataagatatcaaaacataaatatcattct |
51901511 |
T |
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| Q |
201 |
cctcattaatttggtttgatacatcatcattcatcacaaacatgacaaggaattaagactacatattacataatc |
275 |
Q |
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| T |
51901510 |
cctcattaatttggtttgatacatcatcattcatcacaaacatgacaaggaattaagactacatattacataatc |
51901436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 314 - 556
Target Start/End: Complemental strand, 51901397 - 51901151
Alignment:
| Q |
314 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggtgcaatgtaaca---cagcttgttcaacaaaagaag |
410 |
Q |
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| T |
51901397 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggagcaatgtaacacagcagcttgttcaacaaaagaag |
51901298 |
T |
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| Q |
411 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaa-nnnnnnngttcttgttcttcattatttgcctcttaaaatcagccc |
509 |
Q |
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| T |
51901297 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaatttttgttgttcttgttcttcattatttgcctcttaaaatcagccc |
51901198 |
T |
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| Q |
510 |
taaccctccaaaacaagctcctcaacttcctcttcccatgcacaaac |
556 |
Q |
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| T |
51901197 |
taaccctccaaaacaagctcctcaactttctcttcccatgcataaac |
51901151 |
T |
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