View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_41 (Length: 258)
Name: NF18651_low_41
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 45650670 - 45650831
Alignment:
| Q |
19 |
actgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactg |
118 |
Q |
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| T |
45650670 |
actgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactg |
45650769 |
T |
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| Q |
119 |
ccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagat |
180 |
Q |
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| T |
45650770 |
ccacattgatcactaaaaagaagcctaaaatcaaaggattagagaatgtcatcttaagagat |
45650831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 45650828 - 45650871
Alignment:
| Q |
203 |
agatggctatgttttttctaaaggaatgaggctatgaggatatt |
246 |
Q |
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| T |
45650828 |
agatggctatgttttttctaaaggaaggaggctatgaggatatt |
45650871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 45643357 - 45643502
Alignment:
| Q |
19 |
actgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactg |
118 |
Q |
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| T |
45643357 |
actgcaaaggttttgtcactagtccatgtgttataatcaggaccaactgtccaacctaaaccatctccaacaatgtggtttgttgccagagtcggcaatg |
45643456 |
T |
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| Q |
119 |
ccacattgatcactaaaaagaaacctaaaatcaaaggattagagaa |
164 |
Q |
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| T |
45643457 |
gcatagtgatagctaaaaagaagcataaaaccaaagcattagagaa |
45643502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 45702969 - 45702807
Alignment:
| Q |
23 |
caaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactgccac |
122 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||| || ||||||| | ||| ||||| ||||| ||||| ||||| |||| || || |
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| T |
45702969 |
caaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttgttgccagagtcggcaatggcat |
45702870 |
T |
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| Q |
123 |
attgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
185 |
Q |
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| T |
45702869 |
agtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45702807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 45886781 - 45886619
Alignment:
| Q |
23 |
caaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttgcaagagttggcactgccac |
122 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||| || ||||||| | ||| ||||| ||||| ||||| ||||| |||| || || |
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| T |
45886781 |
caaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttgttgccagagtcggcaatggcat |
45886682 |
T |
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| Q |
123 |
attgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
185 |
Q |
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| T |
45886681 |
agtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45886619 |
T |
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