View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_44 (Length: 252)
Name: NF18651_low_44
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15330238 - 15330473
Alignment:
| Q |
1 |
tgcaactgaaaacacaaagaggtaacttaaagctataacccctatgggacatgtcaatgtcgaggttctcaactccacgttgcacagcagcctcaataaa |
100 |
Q |
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| T |
15330238 |
tgcaactgaaaacacaaagaggtaacttaaagctataacccctatggaacatgtcaatgtcgaggttctcaactccacgttgcacagcagcctcaataaa |
15330337 |
T |
|
| Q |
101 |
tatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggggcagtgtgatgtttctggagagcatgacggagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15330338 |
tatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgcttggaggggcagtgtgatgtttctggagagcatgacggagtag |
15330437 |
T |
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| Q |
201 |
acgaaacgactaaaagtggcgaaatctgtaaagttt |
236 |
Q |
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| T |
15330438 |
acgaaacgactaaaagtggcgaaatctgtaaagttt |
15330473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11374548 - 11374368
Alignment:
| Q |
1 |
tgcaactgaaaacacaaagaggtaacttaaagctataacccctatgggacatgtcaatgtcgaggttctcaactccacgttgcacagcagcctcaataaa |
100 |
Q |
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| T |
11374548 |
tgcaactgaacacacaaagaggtaaattaaagctaagatccggagagggcatttcaaggtcgagattctgaattccacgttggacaacagcatgaataaa |
11374449 |
T |
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| Q |
101 |
tatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggggcagtgtgatgtttct |
181 |
Q |
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| T |
11374448 |
tctcttgacatcatgcgggttaaagccagaagagttaccacatttgaggcggaacgactggatggtctgcgtgatgtttct |
11374368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11377733 - 11377495
Alignment:
| Q |
1 |
tgcaactgaaaacacaaagaggtaacttaaagctataacccctatgggacatgtcaatgtcgaggttctcaactccacgttgcacagcagcctcaataaa |
100 |
Q |
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||||||||||||||||| ||||||||||||||| | | ||||||| |||| || ||| |||| || ||||||||| | | ||| | |||||| |
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| T |
11377733 |
tgcaactgaaaacacaatgaggtaacttaaagccaagtttgaaaggggacatctcaaggttgagattctgaattccacgttggaaaatagcatgaataaa |
11377634 |
T |
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| Q |
101 |
tatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattggaggg---gcagtgtgatgtttctggagagcatgacggag |
197 |
Q |
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| T |
11377633 |
tctcttgacatcatgcgggttaaagccagaagagttaccacatttgaggcggaacgactggatggtctgcagcgtgatgtttctcaaggcaatgactgag |
11377534 |
T |
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| Q |
198 |
tagacgaaacgactaaaagtggcgaaatctgtaaagttt |
236 |
Q |
| |
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| T |
11377533 |
tagacaaaatgtcgaaaagtggagaattctgtgaagttt |
11377495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 12646476 - 12646425
Alignment:
| Q |
185 |
gagcatgacggagtagacgaaacgactaaaagtggcgaaatctgtaaagttt |
236 |
Q |
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| T |
12646476 |
gagcatgacggagtagacaaaatgtcgaaaagtggcgaaatctgtgaagttt |
12646425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 12651824 - 12651758
Alignment:
| Q |
96 |
ataaatatattgacatcatgtgggttgaagccagaagagctgccacatttgagacggaacgattgga |
162 |
Q |
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||||||| ||||||||| || |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
12651824 |
ataaataaattgacatcgtgattgttgaagccagaagagtcaccacatttgagtcggaacgattgga |
12651758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 35396809 - 35396676
Alignment:
| Q |
1 |
tgcaactgaaaacacaaagaggtaacttaaagctataacccctatgggacatgtcaatgtcgaggttctcaactccacgttgcacagcagcctcaataaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||| |||| || ||| | || |||||||||||| ||| |||| | |||||| |
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| T |
35396809 |
tgcaactgaaaacacaaagaggtaacttaaagctaagtttgaaaggggacatttcaaggttgagatactgaactccacgttgaacaacagcatgaataaa |
35396710 |
T |
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| Q |
101 |
tatattgacatcatgtgggttgaagccagaagag |
134 |
Q |
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| T |
35396709 |
tctattgacatcatgcgggtcaaagccagaagag |
35396676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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