View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18651_low_6 (Length: 527)

Name: NF18651_low_6

Description: NF18651

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18651_low_6

[»] chr7 (3 HSPs)

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 40; E-Value: 0.0000000000002

Query Start/End: Original strand, 471 - 518

Target Start/End: Original strand, 10933713 - 10933760

Alignment:

Q	471	aagcttcatttaatgtaaaaatggaggatttcatgtgaatgatgatgt	518	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	10933713	aagcttcattcaatgtaaaaatggaggatttcatgtgaatgaagatgt	10933760	T

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Target: chr7; HSP #2

Raw Score: 39; E-Value: 0.0000000000008

Query Start/End: Original strand, 215 - 257

Target Start/End: Original strand, 10933605 - 10933647

Alignment:

Q	215	aaatgtgtgagcttccgaaattcccaatccctcttcatcctta	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	10933605	aaatgtgtgagcttccgaaattcccaatccttcttcatcctta	10933647	T

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Target: chr7; HSP #3

Raw Score: 31; E-Value: 0.00000005

Query Start/End: Original strand, 427 - 461

Target Start/End: Original strand, 10933644 - 10933678

Alignment:

Q	427	cttaattacccaaccaaagaaacttggtaaaatcc	461	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10933644	cttaattgcccaaccaaagaaacttggtaaaatcc	10933678	T

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