View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18651_low_7 (Length: 499)
Name: NF18651_low_7
Description: NF18651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18651_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 30398889 - 30399216
Alignment:
| Q |
14 |
atcaatagaatttgtcccttgggttccataagtcatgagaggcaaattaaaacaataaagggttggtgtaaattagaaacattttgaaaaataatccatg |
113 |
Q |
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| T |
30398889 |
atcaatagaatttgttccttgg-ttccataagtcatgagaggcaaattaaaacaataaagggttggtgtaaattagaaacattttgaaaaataatccatg |
30398987 |
T |
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| Q |
114 |
atactaattgaacagccaaagttcgtagcaactttacgctcttgagatacaaatagttagtaccatgcccacttggtctttccatcaaacaaaaacttcc |
213 |
Q |
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| T |
30398988 |
atactaattgaacagccaaagttcgtagcaactttacgctcttgagatacaaatagttagtaccatgcccacttggtctttccatcaaacaaaaacttcc |
30399087 |
T |
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| Q |
214 |
taactattagatgataaaagacctccaataagggaagtaggggaatacataaatagcaaaacaattagacagttagcatgataatgcacttatctttggt |
313 |
Q |
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| T |
30399088 |
taactattagatgataaaagacctccaataagggaagtaggggaatacataaatagcaaaacagttagacagttagcatgataatgcacttatctttggt |
30399187 |
T |
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| Q |
314 |
tgaagaagttggtagcctgtactgtcgac |
342 |
Q |
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| T |
30399188 |
tgaagaagtttgtagcctctactgtcgac |
30399216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 340 - 483
Target Start/End: Original strand, 30399257 - 30399400
Alignment:
| Q |
340 |
gacttgagatactttcagctatcaaaaaatgcggctagatagtttcagtaaaggaaattaatcaatgcttttgttgaacacagttggaatgattatcaca |
439 |
Q |
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| T |
30399257 |
gacttgagatactttcagctatcaaaaaatgcggctagatagtttcagtaaaggaaattaatcaatgcttttgttgaacacaattggaatgattatcaca |
30399356 |
T |
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| Q |
440 |
tttaatggctttagatcattaagatacaacttcttcgcagtagt |
483 |
Q |
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| T |
30399357 |
tttaatggctttagatcattaagatacaacttctttgcagtagt |
30399400 |
T |
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