View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18652_high_10 (Length: 326)
Name: NF18652_high_10
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 16962041 - 16961743
Alignment:
| Q |
11 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16962041 |
atcatcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggaca |
16961942 |
T |
|
| Q |
111 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatgcaaggttagaagaacaaattatatgtaatttcactcattcagtacttcacg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16961941 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatccaaggttagaagaacaaattatatgtaatttcactcattcagtacttcatg |
16961842 |
T |
|
| Q |
211 |
tttaagtctctaactctaatctgtgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatc |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16961841 |
tttaagtctctaactctaatctatgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatc |
16961743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 24827682 - 24827821
Alignment:
| Q |
11 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
110 |
Q |
| |
|
|||| |||||| ||||| |||||| |||| ||| |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| |||||||| || |
|
|
| T |
24827682 |
atcagcataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatg |
24827781 |
T |
|
| Q |
111 |
ataatctcaatccaaaagttagtggatatagcattccatt |
150 |
Q |
| |
|
||| ||| ||| |||||||||||||||| || |||||||| |
|
|
| T |
24827782 |
atagtcttaatgcaaaagttagtggatacagaattccatt |
24827821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University