View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_high_16 (Length: 237)
Name: NF18652_high_16
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_high_16 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4389146 - 4388956
Alignment:
| Q |
1 |
tcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtattatgagagaagaaatgaatcaagtaaattctc |
100 |
Q |
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| T |
4389146 |
tcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtattatgagagaagaaatgaatcaagtaaattctc |
4389047 |
T |
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| Q |
101 |
attaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatgattgtagactatagaaacc |
191 |
Q |
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| T |
4389046 |
attaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatgattgtagactatagaaacc |
4388956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 4388936 - 4388902
Alignment:
| Q |
187 |
aaaccgtccaacaagttatctgtgtaactaatctt |
221 |
Q |
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| T |
4388936 |
aaactgtccaacaagttatctgtgtaactaatctt |
4388902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 13933 - 14027
Alignment:
| Q |
79 |
gaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatga |
173 |
Q |
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| T |
13933 |
gaaatgaacgaagtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggtgtatgatagctatattacaatga |
14027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 2896 - 2837
Alignment:
| Q |
91 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
150 |
Q |
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| T |
2896 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
2837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 7645 - 7586
Alignment:
| Q |
91 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
150 |
Q |
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| T |
7645 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
7586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 17785 - 17726
Alignment:
| Q |
91 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
150 |
Q |
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| T |
17785 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
17726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 5842743 - 5842684
Alignment:
| Q |
91 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
150 |
Q |
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| T |
5842743 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
5842684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 9606639 - 9606683
Alignment:
| Q |
66 |
tattatgagagaagaaatgaatcaagtaaattctcattaattgat |
110 |
Q |
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| T |
9606639 |
tattatgaaagaagaaatgaatgaagtaaattatcattaattgat |
9606683 |
T |
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