View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_high_5 (Length: 446)
Name: NF18652_high_5
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 41344934 - 41344516
Alignment:
| Q |
18 |
cttatgtagctgttgcgacgaggaaatctctgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaacgcattttggtggcgaca |
117 |
Q |
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| T |
41344934 |
cttatgtagctgttgcgacgaggaaatctctgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaacgcattttggtggcgaca |
41344835 |
T |
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| Q |
118 |
cggaagtccgtcctccaaaacatcctgattagtaagtggttgaaagaggatgaacaaaaacgtcgagacatgttcatgtatgctcccatacatgacattg |
217 |
Q |
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| T |
41344834 |
cggaagtccgtcctccaaaacatcctgattagtaagtggttgaaagaggatgaacaaaaacgtcgagacatgttcatgtatgctcccatacatgacattg |
41344735 |
T |
|
| Q |
218 |
tttgtttcgtttgtggaaaaggagaagatgaaggggaatttattaactgcacaaattgtccctccacttatcatcgttcctgtgctttcatacaggtaat |
317 |
Q |
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| T |
41344734 |
tttgtttagtttgtggaaagggagaagatgaaggggaatttattaactgcacaaattgtccctccacttatcatcgttcctgtgctttcatacaggtaat |
41344635 |
T |
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| Q |
318 |
taatttacnnnnnnnnnncttttgcttacaagaagggtcatgcacatgaattaataaataagtgtgaattgtttcttttcgtttttataccgcagggttt |
417 |
Q |
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| T |
41344634 |
taatttac--ttttttttcttttgcttacaagaagggtcttgcacatgaattaataaataagtgtgaattgtttcttttcgtttttataccgcagggttt |
41344537 |
T |
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| Q |
418 |
ttctcaggaaaacgacgacca |
438 |
Q |
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| T |
41344536 |
ttctcaggaaaacgacgacca |
41344516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 5743938 - 5743972
Alignment:
| Q |
211 |
gacattgtttgtttcgtttgtggaaaaggagaaga |
245 |
Q |
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| T |
5743938 |
gacattgtttgtttagtttgtggaaaaggagaaga |
5743972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 5780897 - 5780931
Alignment:
| Q |
211 |
gacattgtttgtttcgtttgtggaaaaggagaaga |
245 |
Q |
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| T |
5780897 |
gacattgtttgtttagtttgtggaaaaggagaaga |
5780931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 5751729 - 5751762
Alignment:
| Q |
211 |
gacattgtttgtttcgtttgtggaaaaggagaag |
244 |
Q |
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| T |
5751729 |
gacattgtttgtttagtttgtggaaaaggagaag |
5751762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 5788688 - 5788721
Alignment:
| Q |
211 |
gacattgtttgtttcgtttgtggaaaaggagaag |
244 |
Q |
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| T |
5788688 |
gacattgtttgtttagtttgtggaaaaggagaag |
5788721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 9994082 - 9994134
Alignment:
| Q |
48 |
tgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaac |
100 |
Q |
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| T |
9994082 |
tgtatggaactttgagatgcacgttcaaagtgaggatatgcaaccatagaaac |
9994134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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