View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18652_high_6 (Length: 375)

Name: NF18652_high_6
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18652_high_6
NF18652_high_6
[»] chr5 (3 HSPs)
chr5 (11-356)||(4368410-4368755)
chr5 (292-332)||(13355333-13355373)
chr5 (129-193)||(15450965-15451029)
[»] chr8 (3 HSPs)
chr8 (114-357)||(25573654-25573897)
chr8 (198-357)||(3856247-3856406)
chr8 (105-359)||(2998680-2998934)
[»] chr2 (2 HSPs)
chr2 (114-357)||(18497633-18497876)
chr2 (114-357)||(26359297-26359540)
[»] scaffold0779 (1 HSPs)
scaffold0779 (114-357)||(6019-6262)
[»] chr6 (1 HSPs)
chr6 (105-359)||(34825974-34826228)
[»] chr3 (1 HSPs)
chr3 (105-359)||(37194254-37194508)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 4368410 - 4368755
Alignment:
Q  11 aagaaacaacggacaatatcaagatcatcttaagaggatgagtatagagcattgtttactgctactatatcttctaaagaattttaacatcaaatgcacc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368410 aagaaacaacggacaatatcaagatcatcttaagaggatgagtatagaacattgtttactgctactatatcttctaaagaattttaacatcaaatgcacc 4368509  T
Q  111 agacaacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4368510 agacaacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccact 4368609  T
Q  211 tggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcctccaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4368610 tggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcatcacctcctccaaa 4368709  T
Q  311 attcaattcattcatttccaagcttggtatattaaacatttatcat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4368710 attcaattcattcatttccaagcttggtatattaaacatttatcat 4368755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 13355333 - 13355373
Alignment:
Q  292 aagcattacctcctccaaaattcaattcattcatttccaag 332  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  13355333 aagcattacctcctccaaaattcaattcttccatttccaag 13355373  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 15450965 - 15451029
Alignment:
Q  129 tgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcactt 193  Q
    ||||||| ||| |||||| |||||||||||  ||||||| ||||| ||||||| || ||||||||    
T  15450965 tgtgacaaccaaagtgcacttcacatagctgctaatccagtttttcatgaaagaaccaagcactt 15451029  T

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Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 357
Target Start/End: Complemental strand, 25573897 - 25573654
Alignment:
Q  114 caacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccacttgg 213  Q
    |||| ||| ||||| |||||||| || ||||||||||| || ||||  |||||| ||||| |||| || |||||||| || || ||||||| ||| ||||    
T  25573897 caacctgttttgtattgtgacagtcaaagtgcaattcatattgcttcaaatccagtttttcatgagagaacaaagcatttggaaatagactgccatttgg 25573798  T
Q  214 ttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcctccaaaatt 313  Q
    |||||||||||||| |||| |||||||  |  ||||| ||||| || ||  ||||| |||||||||||||  |||||||  | ||| | |||||||| ||    
T  25573797 ttagagagaaaattaaaaagggaatgcttagacttcttcctatctcaacacatgaacagctagcagattttttaacaaagcctttagcacctccaaagtt 25573698  T
Q  314 caattcattcatttccaagcttggtatattaaacatttatcatg 357  Q
    ||||  |||||| ||||||||||| ||  |||| ||||||||||    
T  25573697 caatcaattcatatccaagcttggaatgataaatatttatcatg 25573654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 357
Target Start/End: Original strand, 3856247 - 3856406
Alignment:
Q  198 atagacttccacttggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcat 297  Q
    ||||||| ||| |||||||||||||||||| |||| |||||||  |  ||||| ||||| || ||  ||||| |||||||||||||  |||||||  | |    
T  3856247 atagactgccatttggttagagagaaaattaaaaagggaatgcttagacttcttcctatctcaacacatgaacagctagcagattttttaacaaagcctt 3856346  T
Q  298 tacctcctccaaaattcaattcattcatttccaagcttggtatattaaacatttatcatg 357  Q
    || | |||||||| ||||||  |||||| ||||||||||| ||  |||| ||||||||||    
T  3856347 tagcacctccaaagttcaatcaattcatatccaagcttggaatgataaatatttatcatg 3856406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 359
Target Start/End: Original strand, 2998680 - 2998934
Alignment:
Q  105 tgcaccagacaacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagact 204  Q
    |||| |||||||| ||| || |||||||| || ||||||||||||||||||||||  |||||| | ||| |||| || || || || || || ||||| |    
T  2998680 tgcatcagacaacctgtgttatactgtgatagtcagagtgcaattcacatagcttccaatccagtgtttcatgagagaactaaacatttggaaatagatt 2998779  T
Q  205 tccacttggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcc 304  Q
     |||  | || ||||| ||  | |||||||||||    | | | || |||||  ||||||| ||| |||| ||||||||||| |||||| |  | || ||    
T  2998780 gccatcttgtcagagaaaaggtgcaaaaaggaatattaaggttgcttcctatacctactgaagaacagcttgcagatttccttacaaaacctctgccacc 2998879  T
Q  305 tccaaaattcaattcattcatttccaagcttggtatattaaacatttatcatgct 359  Q
    |||||| |||||||| ||  | ||||||||||| ||  |||| ||||||||||||    
T  2998880 tccaaagttcaattcttttgtatccaagcttggaatgataaatatttatcatgct 2998934  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 114 - 357
Target Start/End: Complemental strand, 18497876 - 18497633
Alignment:
Q  114 caacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccacttgg 213  Q
    |||| ||| ||||| |||||||| || ||||||||||| || ||||  |||||||||||| |||| || |||||||| || || ||||||| ||| ||||    
T  18497876 caacctgttttgtattgtgacagtcaaagtgcaattcatattgcttcaaatccaatttttcatgagagaacaaagcatttggaaatagactgccatttgg 18497777  T
Q  214 ttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcctccaaaatt 313  Q
    |||||||||||||| |||| |||||||  |  ||||| ||||| || ||  ||||| |||||||||||||  |||||||  | ||| | |||||||| ||    
T  18497776 ttagagagaaaattaaaaagggaatgcttagacttcttcctatctcaacacatgaacagctagcagattttttaacaaagcctttagcacctccaaagtt 18497677  T
Q  314 caattcattcatttccaagcttggtatattaaacatttatcatg 357  Q
    ||||  |||| | ||||||||||| ||  |||| ||||||||||    
T  18497676 caatcaattcgtatccaagcttggaatgataaatatttatcatg 18497633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 357
Target Start/End: Complemental strand, 26359540 - 26359297
Alignment:
Q  114 caacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccacttgg 213  Q
    |||| ||| ||||| |||||||| || ||||||||||| || ||||  |||||| ||||| |||| || ||| |||| ||||| ||||||| ||| ||||    
T  26359540 caacctgttttgtattgtgacagtcaaagtgcaattcatattgcttcaaatccagtttttcatgagagaacagagcatttagaaatagactgccatttgg 26359441  T
Q  214 ttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcctccaaaatt 313  Q
    |||||||||||||| |||| |||||||  |  ||||| ||||| || ||  ||||| | |||||||||||  |||||||  | ||| | |||||||| ||    
T  26359440 ttagagagaaaattaaaaagggaatgcttagacttcttcctatctcaacacatgaacaactagcagattttttaacaaagcctttagcacctccaaagtt 26359341  T
Q  314 caattcattcatttccaagcttggtatattaaacatttatcatg 357  Q
    ||||  |||||| ||||||||||| ||  |||| ||||||||||    
T  26359340 caatcaattcatatccaagcttggaatgataaatatttatcatg 26359297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 357
Target Start/End: Original strand, 6019 - 6262
Alignment:
Q  114 caacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagacttccacttgg 213  Q
    |||| ||| ||||| ||||| || || ||||||||||| || ||||  |||||| ||||| | || || ||||||||  | || ||||||| ||| ||||    
T  6019 caacctgttttgtattgtgatagtcaaagtgcaattcatattgcttcaaatccagtttttcacgagagaacaaagcatctggaaatagactgccatttgg 6118  T
Q  214 ttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcctccaaaatt 313  Q
    ||||||||||| || |||| |||||||  |  ||||| ||||| || ||  ||||| |||||||||||||  |||||||  | ||| | |||||||| ||    
T  6119 ttagagagaaacttaaaaagggaatgcttagacttcttcctatctcaacacatgaacagctagcagattttttaacaaagcctttagcacctccaaagtt 6218  T
Q  314 caattcattcatttccaagcttggtatattaaacatttatcatg 357  Q
    ||||  |||||| ||||||||||| ||  |||| ||||||||||    
T  6219 caatcaattcatatccaagcttggaatgataaatatttatcatg 6262  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 359
Target Start/End: Original strand, 34825974 - 34826228
Alignment:
Q  105 tgcaccagacaacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagact 204  Q
    |||| |||||||| ||| || |||||||| || ||||||||||||||||||||||  |||||| | ||| |||| || || || || || || ||||| |    
T  34825974 tgcatcagacaacctgtgttatactgtgatagtcagagtgcaattcacatagcttccaatccagtatttcatgagagaactaaacatttggaaatagatt 34826073  T
Q  205 tccacttggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcc 304  Q
     |||  | || ||||| ||  | ||||||||||| |  | | | || ||||| |||||||| ||| |||| ||||||||||| |||||| |  |  | ||    
T  34826074 gccatcttgtcagagaaaaggtacaaaaaggaatactaaggttgcttcctatatctactgaagaacagcttgcagatttccttacaaaacctctgtcacc 34826173  T
Q  305 tccaaaattcaattcattcatttccaagcttggtatattaaacatttatcatgct 359  Q
    |||||| |||||||| ||  | ||||||||||| ||  |||| ||||||||||||    
T  34826174 tccaaagttcaattcttttgtatccaagcttggaatgataaatatttatcatgct 34826228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 359
Target Start/End: Original strand, 37194254 - 37194508
Alignment:
Q  105 tgcaccagacaacatgtcttgtactgtgacagccagagtgcaattcacatagcttttaatccaattttttatgaaaggacaaagcacttagagatagact 204  Q
    |||| |||||||| ||| || |||||||| || ||||||||||||||||||||||  |||||| | ||| |||| || || || || || || ||||| |    
T  37194254 tgcatcagacaacctgtgttatactgtgatagtcagagtgcaattcacatagcttccaatccagtatttcatgagagaactaaccatttggaaatagatt 37194353  T
Q  205 tccacttggttagagagaaaattcaaaaaggaatgcccaagcttctacctatttctactgatgaagagctagcagatttcctaacaaaagcattacctcc 304  Q
     |||  | || ||||| ||  | ||||||||||| |  | | | || ||||| |||||||| ||| |||| ||||||||||| |||||| |  |  | ||    
T  37194354 gccatcttgtcagagaaaaggtacaaaaaggaatactaaggttgcttcctatatctactgaagaacagcttgcagatttccttacaaaacctctgtcacc 37194453  T
Q  305 tccaaaattcaattcattcatttccaagcttggtatattaaacatttatcatgct 359  Q
    |||||| |||||||| ||  | ||||||||||| ||  |||| ||||||||||||    
T  37194454 tccaaagttcaattcttttgtatccaagcttggaatgataaatatttatcatgct 37194508  T

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