View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_high_9 (Length: 327)
Name: NF18652_high_9
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 37191829 - 37191512
Alignment:
| Q |
10 |
catcatcagtaagtgttttaaaataaggtctgtgatcttagcggagacgtcgaggtttttgatatcttctctatcactatttaaaatcttggtattattg |
109 |
Q |
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| T |
37191829 |
catcattagtaagtgttttaaaataaggtctgtgatcttagcggagacatcgaggtttttgatatcttctctatcactatttaaaaccttggtattatta |
37191730 |
T |
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| Q |
110 |
gtaaactacgaatgagctatattattgagtactaccgcaaatgggggcacaagaacgtatcaaaacaccagctccaactccttccttatcagcaacaaca |
209 |
Q |
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| T |
37191729 |
gtaaactacgaatgagctatattattgagtactaccgcaaatgggggcacaagaacgtatcaaaacaccagctccaactccttccttatcagcaacaaca |
37191630 |
T |
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| Q |
210 |
ttcagcattgtgtggagaccgtagcaaagataaacatatgcatgcccacccggtccaaactgcaaaacaagaccagatacatagcaacatgacaccatca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37191629 |
ttcagcattgtgtggagaccgtagcaaagataaacatatgcatgcccacccggtccaaactgcaaaacaagaccagatacatagcaacatgacaacatca |
37191530 |
T |
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| Q |
310 |
ctctacataacttaactt |
327 |
Q |
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|||||||||||||||||| |
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| T |
37191529 |
ctctacataacttaactt |
37191512 |
T |
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