View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_1 (Length: 801)
Name: NF18652_low_1
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 291 - 782
Target Start/End: Complemental strand, 37191259 - 37190770
Alignment:
| Q |
291 |
ttgtacctaaaactaaggaactgttgagagaaaatgattgcggttatcttgaattagaagttacaaagatataaactgtttttacaagctgatgaatgtg |
390 |
Q |
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| T |
37191259 |
ttgtacctaaaactaaggaactgttaagagaaaatgattgcggttatcttgaattagaagttacaaagatataaactgtttttacaagctgatcaatgtg |
37191160 |
T |
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| Q |
391 |
ataagttgttttcaaaagttgtcgcaattctcaagtcccaatcagtctcacaaagctcaagttggtagataagttaatcaaaagatgtctgatattaagg |
490 |
Q |
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| T |
37191159 |
ataagttgttttcaaaagttgtcgcaattctcaagtcccaatcagtctcacaaagctcaagtta--aaataagttaatcaaaacatgtctgatattaagg |
37191062 |
T |
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| Q |
491 |
attaaattgacttatcgaaaagggccttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagt |
590 |
Q |
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| T |
37191061 |
attaaattgacttatcgaaaagggccttacctcggtaatctgaagaacaacgtcgtctctacggagaaacttcccaagcaaacgaggggcaaggtctagt |
37190962 |
T |
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| Q |
591 |
gcgtcgatttgaaagaactcgcgaggcaaaggttttgcattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcg |
690 |
Q |
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| T |
37190961 |
gcgtcgatttgaaagaactcgcgaggcaaaggttttgtattttcgaatgaaatgtgcggttctgatgaagatgatgggttgggtaatatggaacgccgcg |
37190862 |
T |
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| Q |
691 |
ttttacgtggcggggtggttgggggtttggcgactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaat |
782 |
Q |
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| T |
37190861 |
ttttacgtggcggggtggttgggggtttggctactcgcttgaagcgttgtggttttggggtcattacgacggtgttgctgtggtaacggaat |
37190770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 37191539 - 37191315
Alignment:
| Q |
10 |
gacatcatcactctacataacttaacttagcatcttcaatataaggtagagaattcaaatacccaacatgaacaagcttatgtaaatgataaaaaaggtg |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37191539 |
gacaacatcactctacataacttaacttagcatcttcaatataaggtagagaattcaaatacccaacatgaacaagcttatgtaaatgataaaaaaggtg |
37191440 |
T |
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| Q |
110 |
acnnnnnnntaagcatcttacaacgggagcagttcttggagtaataccaaaccgaccatgactagctgagtcatttgatctatatgcttcaacctatcca |
209 |
Q |
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| T |
37191439 |
acaaaaaaataagcatcttacaacgggagcagttcttggagtaataccaaaccgaccatgactagctgagtcatttgatctatatgcttcaacctatcca |
37191340 |
T |
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| Q |
210 |
acattaattccttgttaaatcgtac |
234 |
Q |
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| T |
37191339 |
acattaattccttgttaaatcgtac |
37191315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 565 - 658
Target Start/End: Original strand, 13419365 - 13419457
Alignment:
| Q |
565 |
caagcaaacgaggggcaaggtctagtgcgtcgatttgaaagaactcgcgaggcaaaggttttgcattttcgaatgaaatgtgcggttctgatga |
658 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||| |||||| ||||||||||||||||| |||||| |||| |
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| T |
13419365 |
caagcaaacgaggggcaaggtctggtgcatcgatttgaaataactcgcgtggcaaa-gttttgttttttcgaatgaaatgtgtggttcttatga |
13419457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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