View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_10 (Length: 345)
Name: NF18652_low_10
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 23040919 - 23041244
Alignment:
| Q |
1 |
actcagaaatccattttggtggttttaagttttgatgtgtttataatcacttatagagttcacttaaaggacgtgttagaatctttattaacactaaaca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23040919 |
actcagaaatccattttggtggttttaaattttgatgtgtttataatcacttatagagttcacttaaaggacgtgttagaatctttattaacactaaaca |
23041018 |
T |
|
| Q |
101 |
atcacttgatgtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaattttgatgtgtttaagatagctaaaaacatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23041019 |
atcacttgatgtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaattttgatgtgtttaagatagctaaaagcatgtg |
23041118 |
T |
|
| Q |
201 |
tttttcttcgatctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaagac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23041119 |
tttttcttggatctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatat-----catcaaaagac |
23041213 |
T |
|
| Q |
301 |
atgtggactctgtcagttaggatcgttgatg |
331 |
Q |
| |
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|| |||||||||||| ||||||||||||||| |
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| T |
23041214 |
atctggactctgtcaattaggatcgttgatg |
23041244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 23557043 - 23556982
Alignment:
| Q |
231 |
taggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgatt |
292 |
Q |
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| T |
23557043 |
taggatggaagatcatgctgaagttgctcgtccttttgatgatatcaaagatatcgatgatt |
23556982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 27587269 - 27587600
Alignment:
| Q |
1 |
actcagaaatccattttggtggttttaagttttgatgtgtttataatcacttatagagttcacttaaaggacgtgttagaatctttattaacactaaaca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
27587269 |
actcagaaatccattttcgtggttttaagttttgatgtgtttataatcacttatagagttcacttaaaggacgtgttacaagctttattaacactaaaca |
27587368 |
T |
|
| Q |
101 |
atcacttgatgtttgatgtgtttaagatacctaaaagcatgtgcttttcttcatttcattgttttaa-ttttgatgtgtttaagatagctaaaaacatgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27587369 |
atcacttgatgtttgatgtgtttaagatacctaaaagcatgtgtttttctacatttcattgttttaatttttgatgtgtttaagatagctaaaagcatga |
27587468 |
T |
|
| Q |
200 |
gtttttcttcgatctgttatgatgtttgtattaggatggaagatcatgttgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaaga |
299 |
Q |
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|
||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27587469 |
gtttttcttggatctgttatgctgtttgtattaggatggaagatcatattgaagttgctcgtccttttgatgatatcaaagatattgatgattcaaaaga |
27587568 |
T |
|
| Q |
300 |
catgtggactctgtcagttaggatcgttgatg |
331 |
Q |
| |
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||| ||||||||| ||||||| |||||||||| |
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|
| T |
27587569 |
catctggactctgccagttagaatcgttgatg |
27587600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 23972147 - 23972069
Alignment:
| Q |
149 |
cttcatttcattgttttaatttt-gatgtgtttaagatagctaaaaacatgtgtttttcttcgatctgttatgatgttt |
226 |
Q |
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|||||||| ||||||||||||| ||||||||||| || |||||| |||||||| |||| |||||||||||||||| |
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| T |
23972147 |
cttcatttgtttgttttaatttttgatgtgtttaatatcactaaaagtatgtgtttatcttgcatctgttatgatgttt |
23972069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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