View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_15 (Length: 274)
Name: NF18652_low_15
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_15 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 49614130 - 49614368
Alignment:
| Q |
13 |
aatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattattattattaccaatttaagtgtttcaatggtttcattattttgc |
112 |
Q |
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| T |
49614130 |
aatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattattattattaccaatttaagtgtttcaatggtttcattattttgc |
49614229 |
T |
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| Q |
113 |
atgttgtactagattgaaattgcaacttcatataaataagctttgcatgaaatagttatgaaaccccaatagttaatcagtggatcgttgtccatacaag |
212 |
Q |
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| T |
49614230 |
atgttgtactagattgaaattgcaacttcatataaataaactttgcatgaaatagttatgaaaccccaatagttaatcagtggatcgttgaccatacaag |
49614329 |
T |
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| Q |
213 |
gagataagtgaaagaaagttaaaccagtcaaattaagtt |
251 |
Q |
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| T |
49614330 |
gagataagtgaaagaaagttaaaccagtcaaattaagtt |
49614368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 49619124 - 49619350
Alignment:
| Q |
27 |
tagtaagttcaatcattgttgaattcataattattgtgattattattattaccaatttaag-----tgtttcaatggtttcattattttgcatgttgtac |
121 |
Q |
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| T |
49619124 |
tagtaagttcaatcattgttgagttcatgattattg---acattattatcaccaatttacgttgtttgttccaatggtttcattatcatgtttgttgtat |
49619220 |
T |
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| Q |
122 |
tagattgaaattgcaacttcatataaata--agctttgcatgaaatagttatgaaa-ccccaatagttaatcagtggatcgttgtccatacaaggagata |
218 |
Q |
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| T |
49619221 |
tagattgaaattctaatattatataaataggtgttttgcgtgaaagatttatgaaacccccaataattaaccaggggatcaatgaccttacatggtggta |
49619320 |
T |
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| Q |
219 |
agtgaaagaaagttaaaccagtcaaattaag |
249 |
Q |
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| T |
49619321 |
agtgaaa-aaagataaaccaatcaaattaag |
49619350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 49617771 - 49617832
Alignment:
| Q |
13 |
aatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattattatta |
74 |
Q |
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| T |
49617771 |
aatataatgactcctagtgagttcaatcattgtcggattcataactattgtaataattatta |
49617832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 2930024 - 2930138
Alignment:
| Q |
41 |
attgttgaattcataattattgtgattattattattaccaatttaagt-----gtttcaatggtttcattattttgcatgttgtactagattgaaattgc |
135 |
Q |
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| T |
2930024 |
attgttgagttcataattattgttattcttattatcaccaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgt |
2930123 |
T |
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| Q |
136 |
aacttcatataaata |
150 |
Q |
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| T |
2930124 |
aatttcatataaata |
2930138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 2996740 - 2996663
Alignment:
| Q |
39 |
tcattgttgaattcataattattgtgattattattattaccaatttaag-----tgtttcaatggtttcattattttg |
111 |
Q |
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| T |
2996740 |
tcattgttgagttcataattattgctattagtattatcaccaatgtaagttgtttgtttcaatggtttcattattttg |
2996663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 43664 - 43599
Alignment:
| Q |
88 |
tgtttcaatggtttcattattttgcatgttgt---actagattgaaattgcaacttcatataaata |
150 |
Q |
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| T |
43664 |
tgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaata |
43599 |
T |
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