View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_18 (Length: 242)
Name: NF18652_low_18
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_18 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 82483 - 82259
Alignment:
| Q |
1 |
ctagttaccaagttgtagtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttt |
100 |
Q |
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| T |
82483 |
ctagttaccaagttgttgtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttt |
82384 |
T |
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| Q |
101 |
tcattgtcaccatatcagccctgctagagagctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccat |
200 |
Q |
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| T |
82383 |
tcattgtcaccatatcagccctgctagagagctctctccatggtgcttgggactcaatgcaagaaactccaatacagtcatcgcacctcatttcttccat |
82284 |
T |
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| Q |
201 |
gcgtgaaacaaaccgacaatgtagc |
225 |
Q |
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| T |
82283 |
ggctgaaacaaaccgacaatgtagc |
82259 |
T |
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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 19152794 - 19152973
Alignment:
| Q |
18 |
gtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatca |
117 |
Q |
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| T |
19152794 |
gtaatgcttctttgatagaatcaataaaatctcattagcatttccatttcaactta----gtagaatcattatactggtgttttcagtgacaccatggca |
19152889 |
T |
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| Q |
118 |
gccctgctagagagctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccatg |
201 |
Q |
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| T |
19152890 |
tccctacttgagagctcttcccatggtgcgagaaactcaataaaagaaactccactacagtcatcacgtctcatttcttccatg |
19152973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 33117059 - 33117114
Alignment:
| Q |
18 |
gtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattga |
73 |
Q |
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| T |
33117059 |
gtaatgcttatttgagtgaatgaatgaaatctcatttacatttccattccaattga |
33117114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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