View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_2 (Length: 691)
Name: NF18652_low_2
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 54 - 393
Target Start/End: Original strand, 28673384 - 28673715
Alignment:
| Q |
54 |
atctttagatttttctggaacatttccatttgagacaaatggaaacttttctgtttatggagatggggttatgcctaaaattagacgtatatgtttttag |
153 |
Q |
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| T |
28673384 |
atctttagatttttctggaacatttccatttgagacaaatggaaacttttctgtttatggagatgg--ttatgcctaaaattagacgtatatgtttttag |
28673481 |
T |
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| Q |
154 |
catttctcttagattaacattgtgtcattgtcataaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaa |
253 |
Q |
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| T |
28673482 |
catttctcttagattaacattgtgtcattgtcataaaacgacatcaatatcaatatgatatacttgcgatatgttcattcgattgagctcatccaaacaa |
28673581 |
T |
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| Q |
254 |
cattgaagatggcgccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttgcaattggcccgccatgcagagaggttgc |
353 |
Q |
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| T |
28673582 |
cattgaagatggcgccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttg----------gccatgcagagaggttgc |
28673671 |
T |
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| Q |
354 |
tcatggccttggttgatatact----gttacattaccaaatcta |
393 |
Q |
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| T |
28673672 |
tcatggccttggttgatatactgacggttacattaccaaatcta |
28673715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 440 - 587
Target Start/End: Original strand, 28673725 - 28673872
Alignment:
| Q |
440 |
ttgaaaaaatatttaacattttaagaaacaatgtatttttgtgtgcgtttaaacaccataaatttaatcttgtgattatataagactatcactttaagca |
539 |
Q |
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| T |
28673725 |
ttgaaaaaatatttaacattttaagaaacaatgtatctttgtgtgcgcttaaacaccataaatttaatcttgtgattatataagactatcactttaagca |
28673824 |
T |
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| Q |
540 |
tcaaggaaatatgaatgctttagaggtgagaattggattcattgactc |
587 |
Q |
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| T |
28673825 |
tcaagaaaatatgaatgctttagaggtgagaattggattcatttactc |
28673872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 37564010 - 37564099
Alignment:
| Q |
236 |
ttgagctcatccaaacaacattgaagatggcgccaacaacagttgaggatttgaagctaaagttattcacagacgagctttctcaacttg |
325 |
Q |
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| T |
37564010 |
ttgagctcatccaaacagtattgaagatggcgccaacatcggatgaggaattgaagctaagattattcacaggcgaggtttctcaacttg |
37564099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 37563910 - 37563946
Alignment:
| Q |
140 |
gtatatgtttttagcatttctcttagattaacattgt |
176 |
Q |
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| T |
37563910 |
gtatatgttttcagcatttctcttagattaacattgt |
37563946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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