View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_6 (Length: 407)
Name: NF18652_low_6
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 25 - 402
Target Start/End: Complemental strand, 15433784 - 15433410
Alignment:
| Q |
25 |
gtaataaaagggtgcaatatacttatcaaacatactgttgaaaatatcttaaaatctgctgcatagttggataaagaactttctgaatttttatgttttt |
124 |
Q |
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| T |
15433784 |
gtaataaaagggtgaaatatacttatcaaacatactgttgaaaatatcttaaaatctgctgcatagttggataaagaactttctgaatttttatgttttt |
15433685 |
T |
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| Q |
125 |
tgaactcatggtgcaatgcaacaataacttaattaaaatctagtttttagtaagagatcagatcaacagtacacaaccttgtttattagagaaaattaat |
224 |
Q |
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| T |
15433684 |
tgaactcgtggtgcaatgcaacaataacttaattaaaatctagtttttagtgagagatcagatcaatagtacacaaccttgtttattagagaaaattaac |
15433585 |
T |
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| Q |
225 |
acaaatatctttttgaaatgagtaatgggtaagtttaacgattgtatgtggatatatttatagtcgtcaaagaaactaaaaataagtagtttctaatcaa |
324 |
Q |
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| T |
15433584 |
acaaatatctttttgaaatgagtaatggataagtttagcgattgtatgtggatatatttatagtcgtcaaagaaactaaaaataagtagtttctaatcaa |
15433485 |
T |
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| Q |
325 |
aaacagtatataataatataaatggtgattttctacaaactttctgttttatttattaaatatttttcctatgctact |
402 |
Q |
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| T |
15433484 |
aaacagtatat---aatataaatggtgattttctgcaaactttctgttttatttatgaaatatttttcctatgatact |
15433410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 15440242 - 15440198
Alignment:
| Q |
344 |
aaatggtgattttctacaaactttctgttttatttattaaatatt |
388 |
Q |
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| T |
15440242 |
aaatggtgaatttctacaaaatttcagttttatttatgaaatatt |
15440198 |
T |
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