View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_7 (Length: 383)
Name: NF18652_low_7
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 9424266 - 9424592
Alignment:
| Q |
2 |
tgaacgagcagaacctgtgtatggtgacaaagtttccatcatctacaatgatcatgttagattttcttggagagaaacctatgaaagatgtctcaagctt |
101 |
Q |
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| T |
9424266 |
tgaacgagcagccactgtgtatggtgacaaagtttccatcatctacaatgatcatgttagattttcttggagagaaacctatgaaagatgtctcaagctt |
9424365 |
T |
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| Q |
102 |
gcttctgctttggtcaacttaggaatttctaatggtgatattgtaagttaatttatctcccaatctccttatggttatattatactttcctctcaagcta |
201 |
Q |
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| T |
9424366 |
gcttctgctttggtcaacttaggaatttctaatggtgatattgtaagttcatttatctcccaatctccttatggttatattatactttcctctcaagcta |
9424465 |
T |
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| Q |
202 |
actattgtttttgctctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgcatcctttgtgac |
301 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424466 |
actattgtttttgttctctcttcatgaccaaatataatgtaacaatggaatgtaaatcagaaaatatatatgatctattgtttcatgcatcctttgtgac |
9424565 |
T |
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| Q |
302 |
aaaatataaaagagatctataagtcaa |
328 |
Q |
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| T |
9424566 |
aaaatataaaagagatctataagtcaa |
9424592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 9424765 - 9424813
Alignment:
| Q |
320 |
ataagtcaaatgtttttctctaaattttagactaaatacatttcatttt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424765 |
ataagtcaaatgtttttctctaaattttagactaaatacatttcatttt |
9424813 |
T |
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