View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18652_low_9 (Length: 373)
Name: NF18652_low_9
Description: NF18652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18652_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 22046650 - 22046994
Alignment:
| Q |
13 |
aatattccagtgatctccaaactcagtccatgtccnnnnnnnnnnnnnnctcttaagaatcttgacatcaacttccatgctttctggtccatacatttcc |
112 |
Q |
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| T |
22046650 |
aatattccagtgatctccaaactcagtccatgacctttttcctttttttctcttaagaatcttgacatcaacttccatgccttctggtccatacatttcc |
22046749 |
T |
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| Q |
113 |
atagaatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacgaaaaataaaatgaagaattgtgaatg |
212 |
Q |
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| T |
22046750 |
acataatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacgaaaaataaaatgaagaattgtgaatg |
22046849 |
T |
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| Q |
213 |
taaaattaccagtttgagatataaaaactaactaaccaatctatacttctcagaataatactttgtaagtttcacttcaaaaggttttggttcaagtcca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
22046850 |
taaaattaccagtttgagatataaaaactaactaaccaatttatacttctcagcataatactttgtaagtttcacttcaaaaggttctagttcaagtcca |
22046949 |
T |
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| Q |
313 |
atat-ttgatatgtatgataatatggtaacttcaatgggctgaat |
356 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
22046950 |
atatatcgatatgtatgataatatggtaacttcaatgggctgaat |
22046994 |
T |
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