View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18653_high_12 (Length: 316)

Name: NF18653_high_12
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18653_high_12
NF18653_high_12
[»] chr3 (8 HSPs)
chr3 (15-297)||(46997196-46997478)
chr3 (37-296)||(46980144-46980403)
chr3 (44-296)||(46974162-46974414)
chr3 (107-286)||(47000951-47001130)
chr3 (37-279)||(46994958-46995200)
chr3 (148-236)||(46955155-46955243)
chr3 (106-236)||(46950785-46950915)
chr3 (131-237)||(46957991-46958097)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 46997196 - 46997478
Alignment:
Q  15 caaaggactacacaccgacgccgaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46997196 caaaggactacacaccgacgccgaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccct 46997295  T
Q  115 cctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46997296 cctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccat 46997395  T
Q  215 acatattaaacctcggtgaactacccatcatcacagtataaggatcaaaaaacagatccattcgatacacaaagggcgaacgt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46997396 acatattaaacctcggtgaactacccatcatcacagtataaggatcaaaaaacagatccattcgatacacaaaaggcgaacgt 46997478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 46980144 - 46980403
Alignment:
Q  37 gaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 136  Q
    |||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46980144 gaattcatgaactcttcatttgtttccagcaccatcattttcttaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 46980243  T
Q  137 aagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaact 236  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||||||     
T  46980244 aaattacttttccatcaaatttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaacc 46980343  T
Q  237 acccatcatcacagtataaggatcaaaaaacagatccattcgatacacaaagggcgaacg 296  Q
    ||  ||||||||||||||||||||||| |||| |||||||||||||| ||| || |||||    
T  46980344 acttatcatcacagtataaggatcaaagaacaaatccattcgatacaaaaaaggagaacg 46980403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 44 - 296
Target Start/End: Original strand, 46974162 - 46974414
Alignment:
Q  44 tgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatgaagttac 143  Q
    ||||||||| ||||| ||||||  ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46974162 tgaactcttcatctgcttccagcgccatcattttctccggcgaaagacacacttcaagatcaatgcttcctcctccttcttgacctggatatgaagttac 46974261  T
Q  144 ttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatc 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46974262 ttttccatcaaatttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatc 46974361  T
Q  244 atcacagtataaggatcaaaaaacagatccattcgatacacaaagggcgaacg 296  Q
    |||||||| |||||||||||||||| |||  ||||||||||||| || |||||    
T  46974362 atcacagtgtaaggatcaaaaaacaaatctgttcgatacacaaaaggagaacg 46974414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 47000951 - 47001130
Alignment:
Q  107 tgctccctcctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattc 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47000951 tgctccctcctcctttttgacctggatatgaagttacttttccatcaaatttgttagcatatcaacttctaactgccaatgcttttcccattccaaattc 47001050  T
Q  207 attcccatacatattaaacctcggtgaactacccatcatcacagtataaggatcaaaaaacagatccattcgatacacaa 286  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47001051 attcccatacatattaaaccttggtgagctacccatcatcacagtataaggatcaaagaacagatccattcgatacacaa 47001130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 37 - 279
Target Start/End: Original strand, 46994958 - 46995200
Alignment:
Q  37 gaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 136  Q
    |||||||||||||||| ||| ||||| || | | |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46994958 gaattcatgaactcttcatcggtttctagcaacgtcattttctccggcgaaagacacacttcaagatcaacgctccctcctccttcttgacctggatatg 46995057  T
Q  137 aagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaact 236  Q
    | ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  46995058 atgttacttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaact 46995157  T
Q  237 acccatcatcacagtataaggatcaaaaaacagatccattcga 279  Q
    ||||||||||||||  ||||||||||  ||||  |||||||||    
T  46995158 acccatcatcacagagtaaggatcaaccaacatgtccattcga 46995200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 46955155 - 46955243
Alignment:
Q  148 ccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaact 236  Q
    |||||||||||||| ||||||||||||  |||||| |  ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46955155 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 46955243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 46950785 - 46950915
Alignment:
Q  106 atgctccctcctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaatt 205  Q
    ||||||||||||||||| || ||   |||||  || || || |||||| ||||||| ||||| |||||   |||||||| || |||||||||||||||||    
T  46950785 atgctccctcctccttcatgtccctcatatgctgtcacattcccatcacatttgtttgcataaccactcaaaactgccactggttttcccattccaaatt 46950884  T
Q  206 cattcccatacatattaaacctcggtgaact 236  Q
    |||| ||||||||||||||||| ||||||||    
T  46950885 catttccatacatattaaaccttggtgaact 46950915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 46957991 - 46958097
Alignment:
Q  131 gatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcgg 230  Q
    ||||||| | ||| || |||||||||||||| |||||||||||   ||||||||  ||||| ||||||||||||||||||||||||||||| ||||| ||    
T  46957991 gatatgatgatacattaccatcaaatttgtttgcatatccactcagaactgccatcgctttacccattccaaattcattcccatacatattgaaccttgg 46958090  T
Q  231 tgaacta 237  Q
     ||||||    
T  46958091 cgaacta 46958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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