View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_high_15 (Length: 296)
Name: NF18653_high_15
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8337717 - 8337437
Alignment:
| Q |
1 |
tttttcagtcataacttattgttttttaaattcacatggtttccatatctgctttttccaacttgtgttcatgtccaaatctcatttattattttcttcc |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8337717 |
tttttcagtcataacttattgtttcttaaatttacatggtttccagatctgttttttccaatttgtgttcatgtccaaatctcatttattattttcttcc |
8337618 |
T |
|
| Q |
101 |
ttcaagtttttgttcacaatcttctcaactccttaaaatttagctaatcctttccttatgacnnnnnnnnnnnnnnnnnngaatgaagttctgaagatgg |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8337617 |
ttcaagttttagttcacaatcttctcaactccttaaagtttagctaatcctttccttatgactttttttttcctttttttgaatgaagttctgaagatgg |
8337518 |
T |
|
| Q |
201 |
aaacacctattcatcaagtcctgaacatggaaatacttaaagagttcattgctgctatcacagatcaaaaagatttgtgga |
281 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
8337517 |
aaacacctattcatcaagtcctgaacatggaaagacctaaagagttcattgctgctgtcacagataaaaaagatttgtgga |
8337437 |
T |
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Back To:
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Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 10234997 - 10234715
Alignment:
| Q |
1 |
tttttcagtcataacttattgttttttaaat-tcacatggtttccatatctgctttttccaacttgtgttcatgtccaaatctcatttattattttcttc |
99 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10234997 |
tttttcagtcataacttattgtttcttaaaaatcacatggtttccagatctgttttttccaacttgtgtttatgtccaaatctcatttattattttcttc |
10234898 |
T |
|
| Q |
100 |
cttcaagtttttgttcacaatcttctcaactccttaaaatttagctaatcctttccttatgac-nnnnnnnnnnnnnnnnnngaatgaagttctgaagat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10234897 |
cttcaagtttttgttcacaatcttctcaactccttaaaatttagctaatcctttccttatgactttttttttccctttttttgaatgaagttctgaagat |
10234798 |
T |
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| Q |
199 |
ggaaacacctattcatcaagtcctgaacatggaaatacttaaagagttcattgctgctatcacagatcaaaaagatttgtgga |
281 |
Q |
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||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234797 |
ggaaacacctattcatcaagtcctgaaaatggaaagacctaaagagttcattgctgctatcacagatcaaaaagatttgtgga |
10234715 |
T |
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