View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_high_18 (Length: 243)
Name: NF18653_high_18
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 34419694 - 34419495
Alignment:
| Q |
22 |
tacagattaaccctagacagcctatactttaaggaaggagacaaacatgtactataaataaaaacaaacataactacattgtaacaggaatcaccttggt |
121 |
Q |
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| T |
34419694 |
tacaaattaatcctaaacagcctatactttaagga----gacaaacatgtactacaaataaaaacaaacataataacattgtaacaggaatcaccttggt |
34419599 |
T |
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| Q |
122 |
ctgtgatggtatggggcaacaaaagcccattcttgtttcctgtaaacaagtagtagaagaaaggtgtgcaaattaggtgataggtctaaaactaatacat |
221 |
Q |
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| T |
34419598 |
ctgtggtggtatggggcaacaaaagcccattcttgtttcctgtaaaccagcagtagaagaaaggtgtgcaaattaggcgataggtctaaaactaatacat |
34419499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 34422841 - 34422780
Alignment:
| Q |
107 |
aggaatcaccttggtctgtgatggtatggggcaacaaaagcccattcttgtttcctgtaaac |
168 |
Q |
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| T |
34422841 |
aggaatcaccttggtctgtggtggtatggggcaatagaagcccattcttatttcctgcaaac |
34422780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 24346326 - 24346271
Alignment:
| Q |
107 |
aggaatcaccttggtctgtgatggtatggggcaacaaaagcccattcttgtttcct |
162 |
Q |
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| T |
24346326 |
aggaattaccttgatctgtggtggtatggggcaagagaaggccattcttgtttcct |
24346271 |
T |
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