View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18653_high_2 (Length: 548)

Name: NF18653_high_2
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18653_high_2
NF18653_high_2
[»] chr2 (5 HSPs)
chr2 (67-532)||(27442575-27443043)
chr2 (271-349)||(27443341-27443419)
chr2 (267-349)||(27406092-27406172)
chr2 (370-456)||(13156276-13156362)
chr2 (13-47)||(27442340-27442374)
[»] chr7 (2 HSPs)
chr7 (380-456)||(41181176-41181252)
chr7 (366-517)||(43403983-43404134)
[»] chr6 (1 HSPs)
chr6 (369-512)||(31602383-31602526)
[»] chr3 (1 HSPs)
chr3 (13-46)||(32876494-32876527)
[»] chr1 (1 HSPs)
chr1 (375-432)||(46819034-46819091)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 67 - 532
Target Start/End: Original strand, 27442575 - 27443043
Alignment:
Q  67 ttaccaaaacatttgtagcaacacaaaaagagtcccacataaccgctacatcacatagtcgacaagtacaaaacaaaccattaaacaacatgacca---- 162  Q
    ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  27442575 ttaccaaaacacttatagcaacacaaaaagagtcccacataacccctacatcacatagtcgacaagtacaaaacaaaccattaaacaatatgaccagagc 27442674  T
Q  163 --caaaacacctcaacagcaactcaaaagagtaagattagccaacacacaacaaaaacactacctcattagacgatctctcggaacgatcccacaaccac 260  Q
      |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  27442675 cacaaaacacctcaacagcaactcaaaagagtaagattagccaaaacacaacaaaaatactacctcattagacaatctctcggaacgatcccacaaccac 27442774  T
Q  261 ccctaaaacctttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatgggatgcatttc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | ||||||||||||||||||||||||||||    
T  27442775 ccctaaaacctttatggaatgggccgaaaaattaatgacattatgtgattttgcatatcagtatctt---tcgaatggccgtctccatgggatgcatttc 27442871  T
Q  361 ctcaggtggaaatttctacagttttctgcagtgccaacatcaataccattagacactttatctctcctgattgttacatttaattctctttgctttcann 460  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27442872 ctcaggtggaaatttctacagttttctgcggtgtcaatatcaataccattagacactttatctctcctgattgttacatttaattctctttgctttcatt 27442971  T
Q  461 nnnnncaatggtcatgaattcattggaccctgcagtcactacagagaatccagtcccgtctccatgttggtg 532  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27442972 tttttcaatggtcatgaattcattggaccctgcagtcactacagagaatccagtcccgtctccatgttggtg 27443043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 27443341 - 27443419
Alignment:
Q  271 tttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatg 349  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||    
T  27443341 tttatggaatgggccgaaaaatgaatgacattatgcgattttgcatttcagtatcttgaatggtatggccgtctccatg 27443419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 27406092 - 27406172
Alignment:
Q  267 aacctttatggaatgggccgaaaaattaatgacattatgcaattttgcatatcagtatctttaatggaatggccgtctccatg 349  Q
    |||||||||||||||||||||||  ||||||||||||||  || ||||||||||||||||| |||||||||||||||||||||    
T  27406092 aacctttatggaatgggccgaaa--ttaatgacattatgtgatgttgcatatcagtatcttgaatggaatggccgtctccatg 27406172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 13156362 - 13156276
Alignment:
Q  370 aaatttctacagttttctgcagtgccaacatcaataccattagacactttatctctcctgattgttacatttaattctctttgcttt 456  Q
    |||| |||||| |||  ||||||| ||||||||||||||||| |||||| ||| |||||||||  || |||||||||||| ||||||    
T  13156362 aaatctctacaatttcatgcagtgtcaacatcaataccattaaacacttcatcgctcctgatttctatatttaattctctatgcttt 13156276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 27442340 - 27442374
Alignment:
Q  13 aatatcaataataaaagatatgttatatataaaaa 47  Q
    ||||||||||||||||||||| |||||||||||||    
T  27442340 aatatcaataataaaagatatattatatataaaaa 27442374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 456
Target Start/End: Complemental strand, 41181252 - 41181176
Alignment:
Q  380 agttttctgcagtgccaacatcaataccattagacactttatctctcctgattgttacatttaattctctttgcttt 456  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||||| |||  |||||||||| |||| ||||||    
T  41181252 agttttctgcagtgtcaacatcactaccattaaacactttatctctcctaatttctacatttaatgctctatgcttt 41181176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 517
Target Start/End: Complemental strand, 43404134 - 43403983
Alignment:
Q  366 gtggaaatttctacagttttctgcagtgccaacatcaataccattagacactttatctctcctgattgttacatttaattctctttgctttca-nnnnnn 464  Q
    |||||||| ||||||||||| |||| |   |||||||||| ||||| |||||||||||||  |||||  | ||||||||||||| |||||| |           
T  43404134 gtggaaatctctacagttttatgcaatcttaacatcaatatcattaaacactttatctcttttgatttctccatttaattctctatgcttttatgttttt 43404035  T
Q  465 ncaatggtcatgaattcattggaccctgcagtcactacagagaatccagtccc 517  Q
     |||||||||||| |||||||||| ||||  | ||||||||||||||||||||    
T  43404034 ccaatggtcatgatttcattggactctgc-ttaactacagagaatccagtccc 43403983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 512
Target Start/End: Complemental strand, 31602526 - 31602383
Alignment:
Q  369 gaaatttctacagttttctgcagtgccaacatcaataccattagacactttatctctcctgattgttacatttaattctctttgctttcannnnnnncaa 468  Q
    ||||| ||||||||||||| | ||| ||||||||||||||||| ||| ||||||| || | |||  | ||||||||| ||  ||||||||       |||    
T  31602526 gaaatctctacagttttctacggtgtcaacatcaataccattaaacaatttatctatcttaatttctgcatttaattttccatgctttcatttttttcaa 31602427  T
Q  469 tggtcatgaattcattggaccctgcagtcactacagagaatcca 512  Q
    ||  ||||| |||| | ||||||||||||| | |||||||||||    
T  31602426 tgaccatgatttcacttgaccctgcagtcattgcagagaatcca 31602383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 32876527 - 32876494
Alignment:
Q  13 aatatcaataataaaagatatgttatatataaaa 46  Q
    ||||||||||||||||||||| ||||||||||||    
T  32876527 aatatcaataataaaagatatattatatataaaa 32876494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 432
Target Start/End: Complemental strand, 46819091 - 46819034
Alignment:
Q  375 tctacagttttctgcagtgccaacatcaataccattagacactttatctctcctgatt 432  Q
    |||||| |||| ||||||| |||||||||||  |||||| ||||||||||| ||||||    
T  46819091 tctacaattttgtgcagtgtcaacatcaatattattagatactttatctcttctgatt 46819034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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