View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_high_7 (Length: 372)
Name: NF18653_high_7
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 145 - 358
Target Start/End: Complemental strand, 14948289 - 14948063
Alignment:
| Q |
145 |
agattgattttgtatatttgagagtttgatgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
244 |
Q |
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| T |
14948289 |
agattgattttgtatatttgagagtttgatatttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
14948190 |
T |
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| Q |
245 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgtt-------------gtaactctcaagtatactttgttctctttcaagatacaa |
331 |
Q |
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| T |
14948189 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgttgcctaaggatgaggtaactctcaagtatactttgttctctttcaagatacaa |
14948090 |
T |
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| Q |
332 |
agatgtaccttaccaacatagtattat |
358 |
Q |
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| T |
14948089 |
agatgtaccttaccaacatagtattat |
14948063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 14948793 - 14948701
Alignment:
| Q |
45 |
aatgtcagttggagattgagatttcacgatgggatagctaaagtctttccgcatgtgcagtctgatcaccaccctattattgttcatactgag |
137 |
Q |
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| T |
14948793 |
aatgtcagttggagattgagatttcatgatgggatagctaaagtcttttcgggtgtgcagtatgatcaccaccctattattgttcatactgag |
14948701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 31046270 - 31046212
Alignment:
| Q |
180 |
atttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatc |
238 |
Q |
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| T |
31046270 |
atttggttttgaaaatatgcaatttataaaataatgtcttgaaatcattggagttcatc |
31046212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29544478 - 29544550
Alignment:
| Q |
173 |
atgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaacaa |
245 |
Q |
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| T |
29544478 |
atgtttgattttgttttgaaaatatgcaatttataaaatattgacttagaatcatcagagttcatcacaacaa |
29544550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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