View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_1 (Length: 811)
Name: NF18653_low_1
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_1 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 16 - 795
Target Start/End: Complemental strand, 27748 - 26963
Alignment:
| Q |
16 |
atgcgcagatttgtgccatgggatgtgtccacagt------gccaggcttactcatatgctcaggtccctgataagcagctgcgtggtcttattccttca |
109 |
Q |
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| T |
27748 |
atgcgcagatttgtgccatgggatgtgtccacagtcacagtgccaggcttactcatatgctcaagtccctgataagcagcagcgtggtcttattccttca |
27649 |
T |
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| Q |
110 |
aactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagaca |
209 |
Q |
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| T |
27648 |
aactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagaca |
27549 |
T |
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| Q |
210 |
taggtatgcatatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattccttttat |
309 |
Q |
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| T |
27548 |
taggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattccttttat |
27449 |
T |
|
| Q |
310 |
tcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacctcgcata |
409 |
Q |
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| T |
27448 |
tcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacctcgcata |
27349 |
T |
|
| Q |
410 |
cttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcgtgttgatcaaagtaga |
509 |
Q |
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| T |
27348 |
cttcaactttagatgcaataccacaacaggccaaggtcaccttagcttcacggccgctaacaacgttagttacagagttattcgtgttgatcaaagtaga |
27249 |
T |
|
| Q |
510 |
agaaagtttacccttcaaaatcaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgtttcgcatga |
609 |
Q |
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| T |
27248 |
agaaagcttacccttcataatgaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgtttcgcatga |
27149 |
T |
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| Q |
610 |
ccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctggaaacattc |
709 |
Q |
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| T |
27148 |
ccagtgacaatacgtgctctgaacaacttgaagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctggaaccattc |
27049 |
T |
|
| Q |
710 |
tacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaatttgtaccaaaagtaagtatt |
795 |
Q |
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| T |
27048 |
tacttgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaaattgtaccaaaagtaagtatt |
26963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 294 - 766
Target Start/End: Complemental strand, 2307 - 1838
Alignment:
| Q |
294 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
393 |
Q |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
|
| Q |
394 |
gtggagacctcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcg |
493 |
Q |
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| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaacatctcaacg------ggtaaacttagcttcaccgccaacaacaacgttagttacaaagttattag |
2114 |
T |
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| Q |
494 |
tgttgatcaaagtagaagaaagtttacccttcaaaatcaggattattcctt--tacta-gttgtgatgaaggatctaaacggacaggaagtctgaacgtt |
590 |
Q |
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| T |
2113 |
tgtagacccaagttcaagaacatttaccatttataatgagcataattctttcaaacaatattgtgctgaaggatctaaatagaaaggcaatttgaaggtt |
2014 |
T |
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| Q |
591 |
tctttaccgtttcgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgatt |
690 |
Q |
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| T |
2013 |
ttctcaccgttttactttgccaatgacaatccatgctctgaacaagtggaagttagttgggatccaccttccgaactcgtttgtgataactttgttgatt |
1914 |
T |
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| Q |
691 |
gccatggctggaaacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcga |
766 |
Q |
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| T |
1913 |
tctatggttggaaacattctacctgtagtaaaggaaacaagtgtctttgcaatgcaaagtataaatggagtggcga |
1838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
105 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
204 |
Q |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
205 |
agacataggtatgcatatgatgattaaattaga |
237 |
Q |
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||| ||||||||||| |||||||||||||||| |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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