View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_10 (Length: 368)
Name: NF18653_low_10
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_10 |
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| [»] scaffold0027 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 62960 - 63311
Alignment:
| Q |
17 |
agttaggccattttttacagaaagagcgagcccacaagcagttgctgcaaccaagtttcagaatctttataacatgtcttgagaggatgtcgccgacaag |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
62960 |
agttaggccattttttacagaaagagcgagccaacaagcagttgctgcaaccaagtttcagaatctttataacatgtcttgagaggatgtcgccgacaag |
63059 |
T |
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| Q |
117 |
aagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccggac |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
63060 |
aagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccggac |
63159 |
T |
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| Q |
217 |
atcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaacaaactgccacact |
316 |
Q |
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| T |
63160 |
atcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaacaaactgccacact |
63259 |
T |
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| Q |
317 |
gacattttaaaacactgaaaagtagcgtgagacgattcaagagcatgatgcc |
368 |
Q |
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| T |
63260 |
gacattttaaaacactgaaaagtagcgtgagacgattcaagagcatgatgcc |
63311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 21320839 - 21320488
Alignment:
| Q |
17 |
agttaggccattttttacagaaagagcgagcccacaagcagttgctgcaaccaagtttcagaatctttataacatgtcttgagaggatgtcgccgacaag |
116 |
Q |
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| T |
21320839 |
agttaggccattttttacagaaagagcgagccaacaagcagttgctgcaaccaagtttcagaatctttataacatgtcttgagaggatgtcgccgacaag |
21320740 |
T |
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| Q |
117 |
aagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccggac |
216 |
Q |
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| T |
21320739 |
aagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccggac |
21320640 |
T |
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| Q |
217 |
atcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaacaaactgccacact |
316 |
Q |
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| T |
21320639 |
atcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatacagttcaacaaactgccacact |
21320540 |
T |
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| Q |
317 |
gacattttaaaacactgaaaagtagcgtgagacgattcaagagcatgatgcc |
368 |
Q |
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| T |
21320539 |
gacattttaaaacactgaaaagtagcgtgagacgattcaagagcatgatgcc |
21320488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 44633722 - 44633767
Alignment:
| Q |
116 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgca |
161 |
Q |
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|||||||||||| |||||||||||||||| |||||| |||| |||| |
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| T |
44633722 |
gaagccaaacatcgacacaattttcattgcaaatcaaagttatgca |
44633767 |
T |
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