View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_16 (Length: 313)
Name: NF18653_low_16
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 42806551 - 42806263
Alignment:
| Q |
18 |
ataatgttatttattactgatttattaccacctttgaagtttttgtacattattaaactcgttaagtttattttgatagaactcatttctcttgattcat |
117 |
Q |
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| T |
42806551 |
ataatgttatttattactgatttattaccacctttgaagtttttgtacattattaaactcgttaagtttattttgatagaactcatttctcttgattcat |
42806452 |
T |
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| Q |
118 |
taatacaaagcttacttatcgtaagaatagcatggtacaccttatcatacggcctagtatgtagttaatcatagtttggtctctaaccaactaattctta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42806451 |
taatacaaagcttacttatcgtaagaatagcatggtacaccttatcatacggcctagtatgtacttaatcatagtttggtctctaaccaactaattctta |
42806352 |
T |
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| Q |
218 |
attaattattaattaatgacttgatatacaaataagctcagtaaactactatggcagttattctaactaaccatagatggtgatgatgt |
306 |
Q |
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| T |
42806351 |
attaattattaattaatgacttgatatacaaataagctcagtaaactactatggcagttattctaactaaccatagatggtgatgatgt |
42806263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 173 - 306
Target Start/End: Complemental strand, 42806235 - 42806106
Alignment:
| Q |
173 |
agtatgtagttaatcatagtttggtctctaaccaactaattcttaattaattattaattaatgacttgatatacaaataagctcagtaaactactatggc |
272 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||| ||||||| |
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| T |
42806235 |
agtacgtagttaatcatagtttggtctctaatcaactaattcttaattaattattaat----gacttgtgatataagtaagctcagtaaactgctatggc |
42806140 |
T |
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| Q |
273 |
agttattctaactaaccatagatggtgatgatgt |
306 |
Q |
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| T |
42806139 |
atttattctaactaaccatagagggtgatgatgt |
42806106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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