View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_17 (Length: 312)
Name: NF18653_low_17
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_17 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 114549 - 114259
Alignment:
| Q |
18 |
attactaggttgtgaagtagaagcacaatctctaccacttttatttggatgcataggctctgtgtcgtgaagatctctgggaatattaccatctttattt |
117 |
Q |
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| T |
114549 |
attactaggttgtgaagtagaagcacaatctctaccacttttatttggatggataggctctgagtcgtgaacatctttggtaatattaccatctttattt |
114450 |
T |
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| Q |
118 |
gaaaccattacagattgtgtcacagaactaaaatgtttcccatttaaccacggagaatcagttgaaaaagctcgaggttgaggtttaataacatcatcac |
217 |
Q |
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| T |
114449 |
gaatccattacagactgtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgac |
114350 |
T |
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| Q |
218 |
ctctcataatttccttgggtaatttctcttcttttgtttcttctgtttctgaaacaaccttcttcttcaaatgagtgtgccaatagttttt |
308 |
Q |
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| T |
114349 |
ctttcacattttcctttggtattttctcttcttttatttcttctctttctaaaacaaccttcttcctcaaatgtgtgtgccaatagttttt |
114259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 33734154 - 33734330
Alignment:
| Q |
132 |
ttgtgtcacagaactaaaatgtttcccatttaaccacggagaatcagttgaaaaagctcgaggttgaggtttaataacatcatcacctctcataatttcc |
231 |
Q |
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| T |
33734154 |
ttgtgacacaaaattaacatgtttcctattcaaccatgatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttcattgtttcc |
33734253 |
T |
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| Q |
232 |
ttgggtaatttctcttcttttgtttcttctgtttctgaaacaaccttcttcttcaaatgagtgtgccaatagttttt |
308 |
Q |
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| T |
33734254 |
ttaggtttctctttttctttcttttcttttgtttctgaaacaaccttcttccgcaaatgtgtgtgccaaaagttttt |
33734330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 33748644 - 33748802
Alignment:
| Q |
150 |
atgtttcccatttaaccacggagaatcagttgaaaaagctcgaggttgaggtttaataacatcatcacctctcataatttcctt-gggtaatttctcttc |
248 |
Q |
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|||||||||||| ||||| || |||| ||||||||||| | || ||||||||||||| |||| | || | ||||||||||| |||| || | | ||| |
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| T |
33748644 |
atgtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttaataacttcatgagctttaataatttccttagggttatcttt-ttc |
33748742 |
T |
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| Q |
249 |
ttttgtttcttctgtttctgaaacaaccttcttcttcaaatgagtgtgccaatagttttt |
308 |
Q |
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| T |
33748743 |
tttcttttcttttgctcttgaaacatccttattcttcaaatgagtgttccaatagttttt |
33748802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 33865758 - 33865819
Alignment:
| Q |
153 |
tttcccatttaaccacggagaatcagttgaaaaagctcgaggttgaggtttaataacatcat |
214 |
Q |
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| T |
33865758 |
tttcccattcaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcat |
33865819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 33834764 - 33834922
Alignment:
| Q |
150 |
atgtttcccatttaaccacggagaatcagttgaaaaagctcgaggttgaggtttaataacatcatcacctctcataatttcctt-gggtaatttctcttc |
248 |
Q |
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|||||||||||| ||||| || |||| ||||||||||| | || ||||||| ||||| |||| | || | ||||||||||| |||| || | | ||| |
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| T |
33834764 |
atgtttcccattcaaccaaggtgaatgagttgaaaaagttaatggacgaggtttgataacttcatgagctttaataatttccttagggttatcttt-ttc |
33834862 |
T |
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| Q |
249 |
ttttgtttcttctgtttctgaaacaaccttcttcttcaaatgagtgtgccaatagttttt |
308 |
Q |
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| T |
33834863 |
tttcttttcttttgctcttgaaacatccttattcttcaaatgagtgttccaatagttttt |
33834922 |
T |
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