View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_19 (Length: 277)
Name: NF18653_low_19
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 25 - 262
Target Start/End: Original strand, 32833617 - 32833854
Alignment:
| Q |
25 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833617 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32833716 |
T |
|
| Q |
125 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833717 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32833816 |
T |
|
| Q |
225 |
tcaagatcctccatcctcacccaaaaacaaacctccat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32833817 |
tcaagatcctccatcctcacccaaaaacaaacctccat |
32833854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 25 - 262
Target Start/End: Original strand, 32840031 - 32840268
Alignment:
| Q |
25 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840031 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32840130 |
T |
|
| Q |
125 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840131 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32840230 |
T |
|
| Q |
225 |
tcaagatcctccatcctcacccaaaaacaaacctccat |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32840231 |
tcaagatcctccatcctcacccaaaaacaaacctccat |
32840268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 29605235 - 29605454
Alignment:
| Q |
43 |
gttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatc |
142 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29605235 |
gttacggttagagttacttgtgaagcaagtttccaattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatc |
29605334 |
T |
|
| Q |
143 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||| ||||||| |
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| T |
29605335 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaagatcttccatccaa |
29605434 |
T |
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| Q |
243 |
acccaaaaacaaacctccat |
262 |
Q |
| |
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|||||||| ||||||||| |
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| T |
29605435 |
tcccaaaaatcaacctccat |
29605454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 19947009 - 19946835
Alignment:
| Q |
50 |
ttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatcataataa |
149 |
Q |
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|||||||||||||||||||||||||| | ||| |||||||||||||| || |||| | |||||||||| || |||||||||| ||||| ||||| |
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| T |
19947009 |
ttagagttacttgtgaagcaagcttctagttccaacaagcatacactaaa---gcact-agtatataataacaatgtgtatcacaaaataatcacaataa |
19946914 |
T |
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| Q |
150 |
catttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagat |
231 |
Q |
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||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | |||||| |
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| T |
19946913 |
catttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacacccaagat |
19946835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 19947296 - 19947235
Alignment:
| Q |
35 |
agaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacact |
96 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| | ||| || ||||||||||| |
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| T |
19947296 |
agaagtctgttacagttagagttacttgtgaagcaagtttctagttccaaaaagcatacact |
19947235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
145 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
231 |
Q |
| |
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||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 28405906 - 28405871
Alignment:
| Q |
42 |
agttacagttagagttacttgtgaagcaagcttcca |
77 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
28405906 |
agttacagttagagttacttgtgaagcaagtttcca |
28405871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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