View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18653_low_2 (Length: 571)
Name: NF18653_low_2
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 20 - 564
Target Start/End: Complemental strand, 30401031 - 30400487
Alignment:
| Q |
20 |
cattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaaataaaacatgaattaactatacaatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30401031 |
cattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaaataaaacatgaattaactatacaatt |
30400932 |
T |
|
| Q |
120 |
ctcttttacgctcataattttgttttttgaaaatgagtcggagactgtagaagaaaagaaattacagatttagtaacattattgcaatcatataaatgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400931 |
ctcttttacgctcataattttgttttttgaaaatgagtcggagactatagaagaaaagaaattacagatttagtaacattattgcaatcatataaatgaa |
30400832 |
T |
|
| Q |
220 |
ctacannnnnnncctaagtacattcttgtgaaataaggtaacttttttgcgttggctgaactaacggtcttcttacctaaatccaagatttattctcaat |
319 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400831 |
ctacatttttttcctaagtacattctcgtgaaataaggtaacttttttgcgttggctgaactaacggtcttcttacctaaatccaagatttattctcaat |
30400732 |
T |
|
| Q |
320 |
aattaaaagtatatgaattgtatagagacgagaatgtaacaacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400731 |
aattaaaagtatatgaattgtatagagacaagaatgtaacaacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattc |
30400632 |
T |
|
| Q |
420 |
acaaacatacagaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgac |
519 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400631 |
acaaacatacacaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgac |
30400532 |
T |
|
| Q |
520 |
ccttgagctaatgcagccacccatgccagtgtgttattgatgatg |
564 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30400531 |
ccttgagctaatgcagccatccatgccagtgtgttattgatgatg |
30400487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 30388344 - 30388308
Alignment:
| Q |
446 |
attaagaaatgaaaatgtgaataacagtgttatttat |
482 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
30388344 |
attaagaaaggaaaatgtgaataacaatgttatttat |
30388308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University