View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_24 (Length: 214)
Name: NF18653_low_24
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 12496836 - 12496721
Alignment:
| Q |
27 |
tcacctacaccaatgatgaagacccaatatcgctggagaagaaggaggcatggtggttgtcgttgaatcctagaaaaagatgaggtatggtggttgagat |
126 |
Q |
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| T |
12496836 |
tcacctacaccaatgatgaagacccaatatcaccggagaagaaggaggcatggtggttgtcgttgaatcctagaaaaagatgagatatggttgttgagat |
12496737 |
T |
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| Q |
127 |
ccgagttaaataagca |
142 |
Q |
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| T |
12496736 |
ccgagtgaaataagca |
12496721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 44920942 - 44920890
Alignment:
| Q |
62 |
gagaagaaggaggcatggtggttgtcgttgaatcctaga-aaaagatgaggta |
113 |
Q |
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| T |
44920942 |
gagaagaaggaggcatggtggttgtcgtgggatcctagaaaaaagatgaggta |
44920890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 22855611 - 22855669
Alignment:
| Q |
27 |
tcacctacaccaatgatgaagacccaatatcgctggagaagaaggaggcatggtggttg |
85 |
Q |
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| T |
22855611 |
tcacctacactgatgttaaagacccaatatcgccggaaaagaaggaggcatggtggttg |
22855669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 2857703 - 2857634
Alignment:
| Q |
64 |
gaagaaggaggcatggtggttgtcgttgaatcctagaa-aaagatgaggtatggtggttgagatccgagt |
132 |
Q |
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| T |
2857703 |
gaagaaggaggcatggtggttgtcgtgggatactagaagaaagatgaggtatcgtggttgagatccgagt |
2857634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 47430461 - 47430526
Alignment:
| Q |
64 |
gaagaaggaggcatggtggttgtcgttgaatcctagaa-aaagatgaggtatggtggttgagatcc |
128 |
Q |
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||||||||||||||| || ||||||| | || |||||| ||||||||||||||||||||||||||| |
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| T |
47430461 |
gaagaaggaggcatgttgtttgtcgtgggatactagaagaaagatgaggtatggtggttgagatcc |
47430526 |
T |
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