View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_25 (Length: 204)
Name: NF18653_low_25
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 1193084 - 1192915
Alignment:
| Q |
16 |
atgaagaagcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggtttttggacacaatatttcttca |
115 |
Q |
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| T |
1193084 |
atgaagaatcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggttcttggacacaatatttcttca |
1192985 |
T |
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| Q |
116 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaattt |
185 |
Q |
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| T |
1192984 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaattt |
1192915 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 45642162 - 45642202
Alignment:
| Q |
48 |
cttagtgttggtcaaattacagttacaatatttctttcatg |
88 |
Q |
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| T |
45642162 |
cttagtgttggtcaaatttcagtcacaatatttccttcatg |
45642202 |
T |
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