View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_6 (Length: 392)
Name: NF18653_low_6
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 176 - 376
Target Start/End: Complemental strand, 12692074 - 12691874
Alignment:
| Q |
176 |
gaagcaaaagtctaacagccaacaataataggatagccagtaaaaaattaataataatatatgtaaatactcttacattgagggttaatcgtaccattca |
275 |
Q |
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| T |
12692074 |
gaagcaaaggtctaacagccaacaataataggatagccagtaaaaaattaataataatatatgtaaatgctcttacattgagggttaatcgtaccattca |
12691975 |
T |
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| Q |
276 |
gtttaacatttcaatttacttgtattggtttagtcccgcgtatatttccttcccatttagatttgtcnnnnnnntaaataaataaagttttaagataatg |
375 |
Q |
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| T |
12691974 |
gtttaacatttcaatttacttgtattggtttagtcccgcgtatatttccttcccatttagatttgtcaaaaaaataaataaataaagttttaagataatg |
12691875 |
T |
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| Q |
376 |
g |
376 |
Q |
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| T |
12691874 |
g |
12691874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 12692238 - 12692141
Alignment:
| Q |
13 |
aatatcccctcgttaatttaattaaagaattaatatttcaaactaaaatacttgtattggtttagtcccatatatttcaaactaaagtattggtttac |
110 |
Q |
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| T |
12692238 |
aatatcccctcgttaatttaattaaagaattaatatttcaaactaaaatacttgtattggtttagtcccacatatttcaaactaaagtattggtttac |
12692141 |
T |
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