View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18653_low_8 (Length: 375)
Name: NF18653_low_8
Description: NF18653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18653_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 3088781 - 3089131
Alignment:
| Q |
1 |
attagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaatttttctgtcactc |
100 |
Q |
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| T |
3088781 |
attagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaatttttctgtcactc |
3088880 |
T |
|
| Q |
101 |
ttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcagatgatgttgcttct |
200 |
Q |
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| T |
3088881 |
ttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcagatgatgttgcttct |
3088980 |
T |
|
| Q |
201 |
tgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgcctccaaatgttaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088981 |
tgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgcctccaaatgttaat |
3089080 |
T |
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| Q |
301 |
taatgtttagatttcttattttggatgtgcttgttttgaactaatcatgtagttgg |
356 |
Q |
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|||||||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
3089081 |
taatgtttagatttct--ttttg---cttcttgttttgaactaatcatgtagttgg |
3089131 |
T |
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