View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18654_high_11 (Length: 438)
Name: NF18654_high_11
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 47 - 361
Target Start/End: Original strand, 33491923 - 33492247
Alignment:
| Q |
47 |
tgtttttaaattactttgcaacaaattccatttttgaactttac-----------aattagcatgtcattgttgatccgatgacgctgaatatgatgtca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33491923 |
tgtttttaaattactttgcaacaaattccatttttgaactttacaactaggttacaattagcatgtcattgttgatccgatgacgctgaatatgatgtca |
33492022 |
T |
|
| Q |
136 |
ttttgacatgaagcaaaaactgagataggttaaaaattagaaactagtatgacatgaatcagaaactggtatgtcagcaagataccatgtattcattttg |
235 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33492023 |
ttttgacatgaagcagaaactgagataggttaaaaattagaaactagtatgacatgaatcagaaactggtatgttagcaagataccatgtattcattttg |
33492122 |
T |
|
| Q |
236 |
tcgtatgatgtcattttggtatgtcagttgggtttcatcaaggctctctcaaacctttaataacggagaattactgtcaaccgaagccggaactctagct |
335 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
33492123 |
tc-tatgatgtcattttggtatgtcagttgggtttcatcaaggctctctcaaacctttaataatggagaattactgtcaactgaagccggaactttagct |
33492221 |
T |
|
| Q |
336 |
cgagcaattgcatatggtacaataaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33492222 |
cgagcaattgcatatggtacaataaa |
33492247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 28809513 - 28809438
Alignment:
| Q |
295 |
ataacggagaattactgtcaaccgaagccggaactctagctcgagcaattgcatatggtacaataaaaatttcagg |
370 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
28809513 |
ataacggaggattactgtcaaccgaagccggaactctagctcgagtaattgcagatggtacaataacaatttcagg |
28809438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 28811349 - 28811302
Alignment:
| Q |
189 |
atgaatcagaaactggtatgtcagcaagataccatgtattcattttgt |
236 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
28811349 |
atgaagcagaaactggtatgtcagcaaggttccatgtattcattttgt |
28811302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 33420862 - 33420903
Alignment:
| Q |
55 |
aattactttgcaacaaattccatttttgaactttacaattag |
96 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
33420862 |
aattactttgcaacaaattacatgtttgaactttacaattag |
33420903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University