View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18654_high_12 (Length: 435)
Name: NF18654_high_12
Description: NF18654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18654_high_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 15798863 - 15798433
Alignment:
| Q |
1 |
ctgcttttggtgaagacccttcgacaccaccaccagtaagctgagcaagctctccatcaacatcaggacaatcttcttgtatcacaacattgctaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15798863 |
ctgcttttggtgaagacccttcgacaccaccaccagtaagctgagcaagctctccatcaacatcaggacaatcttcttgtatcacaacattgctaaagtc |
15798764 |
T |
|
| Q |
101 |
cataccaggtgggataacctgtgaggagtgtgcttcattgagtcattgaacaaaagtggaatatttacgcgatgaaatgaaaatacaaaaacaga--gaa |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||||| ||| |
|
|
| T |
15798763 |
cataccaggtgggataacctgtgaggagtgtacttcattgagtcattcaacaaaagtggaatatttgcg-----aaatgaagatacaaaaacagaaagaa |
15798669 |
T |
|
| Q |
199 |
aacaacatactcattcactagcacgtaaacaggcacatctgtgatgcttttcgcaataaaaataatggtagttacaaatttttatgcgattatttgaaga |
298 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
15798668 |
aacaacatactcattcactagcacgcaaacaggaacatctgtgatgcttttcgcaataaaaataatggaagttacaaaattttatgagattatttgaaga |
15798569 |
T |
|
| Q |
299 |
aatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaactggaagagcgnnnnnnnggcacaccaaaactt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
15798568 |
aatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaaatggaagagcg-aaaaaaggcacacgaaaactt |
15798470 |
T |
|
| Q |
399 |
tgaagtaatattataatttcaatttgaacatttaatc |
435 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
15798469 |
tgaaggaatattataacttcaatttgaacattcaatc |
15798433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 39811356 - 39811263
Alignment:
| Q |
28 |
caccaccagtaagctgagcaagctctccatcaacatcaggacaatcttcttgtatcacaacattgctaaagtccataccaggtgggataacctg |
121 |
Q |
| |
|
|||||||||||||||| | || || |||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39811356 |
caccaccagtaagctgtgagagatccccatcaacttcagggccatcttcttgtatcaccacattgctaaagtccataccaggagggataacctg |
39811263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University